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2013


Thumb xl thumb hennigk2012 2
Quasi-Newton Methods: A New Direction

Hennig, P., Kiefel, M.

Journal of Machine Learning Research, 14(1):843-865, March 2013 (article)

Abstract
Four decades after their invention, quasi-Newton methods are still state of the art in unconstrained numerical optimization. Although not usually interpreted thus, these are learning algorithms that fit a local quadratic approximation to the objective function. We show that many, including the most popular, quasi-Newton methods can be interpreted as approximations of Bayesian linear regression under varying prior assumptions. This new notion elucidates some shortcomings of classical algorithms, and lights the way to a novel nonparametric quasi-Newton method, which is able to make more efficient use of available information at computational cost similar to its predecessors.

website+code pdf link (url) [BibTex]

2013

website+code pdf link (url) [BibTex]


Thumb xl visapp
Simple, fast, accurate melanocytic lesion segmentation in 1D colour space

Peruch, F., Bogo, F., Bonazza, M., Bressan, M., Cappelleri, V., Peserico, E.

In VISAPP (1), pages: 191-200, Barcelona, February 2013 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl thumbiccvsilvia
Estimating Human Pose with Flowing Puppets

Zuffi, S., Romero, J., Schmid, C., Black, M. J.

In IEEE International Conference on Computer Vision (ICCV), pages: 3312-3319, 2013 (inproceedings)

Abstract
We address the problem of upper-body human pose estimation in uncontrolled monocular video sequences, without manual initialization. Most current methods focus on isolated video frames and often fail to correctly localize arms and hands. Inferring pose over a video sequence is advantageous because poses of people in adjacent frames exhibit properties of smooth variation due to the nature of human and camera motion. To exploit this, previous methods have used prior knowledge about distinctive actions or generic temporal priors combined with static image likelihoods to track people in motion. Here we take a different approach based on a simple observation: Information about how a person moves from frame to frame is present in the optical flow field. We develop an approach for tracking articulated motions that "links" articulated shape models of people in adjacent frames trough the dense optical flow. Key to this approach is a 2D shape model of the body that we use to compute how the body moves over time. The resulting "flowing puppets" provide a way of integrating image evidence across frames to improve pose inference. We apply our method on a challenging dataset of TV video sequences and show state-of-the-art performance.

pdf code data DOI Project Page Project Page Project Page [BibTex]

pdf code data DOI Project Page Project Page Project Page [BibTex]


Thumb xl illuminationpami13
Simultaneous Cast Shadows, Illumination and Geometry Inference Using Hypergraphs

Panagopoulos, A., Wang, C., Samaras, D., Paragios, N.

IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI), 35(2):437-449, 2013 (article)

pdf [BibTex]

pdf [BibTex]


no image
Right Ventricle Segmentation by Temporal Information Constrained Gradient Vector Flow

X. Yang, S. Y. Yeo, Y. Su, C. Lim, M. Wan, L. Zhong, R. S. Tan

In IEEE International Conference on Systems, Man, and Cybernetics, 2013 (inproceedings)

Abstract
Evaluation of right ventricular (RV) structure and function is of importance in the management of most cardiac disorders. But the segmentation of RV has always been consid- ered challenging due to low contrast of the myocardium with surrounding and high shape variability of the RV. In this paper, we present a 2D + T active contour model for segmentation and tracking of RV endocardium on cardiac magnetic resonance (MR) images. To take into account the temporal information between adjacent frames, we propose to integrate the time-dependent constraints into the energy functional of the classical gradient vector flow (GVF). As a result, the prior motion knowledge of RV is introduced in the deformation process through the time-dependent constraints in the proposed GVF-T model. A weighting parameter is introduced to adjust the weight of the temporal information against the image data itself. The additional external edge forces retrieved from the temporal constraints may be useful for the RV segmentation, such that lead to a better segmentation performance. The effectiveness of the proposed approach is supported by experimental results on synthetic and cardiac MR images.

[BibTex]

[BibTex]


Thumb xl gcpr thumbnail 200 112
A Comparison of Directional Distances for Hand Pose Estimation

Tzionas, D., Gall, J.

In German Conference on Pattern Recognition (GCPR), 8142, pages: 131-141, Lecture Notes in Computer Science, (Editors: Weickert, Joachim and Hein, Matthias and Schiele, Bernt), Springer, 2013 (inproceedings)

Abstract
Benchmarking methods for 3d hand tracking is still an open problem due to the difficulty of acquiring ground truth data. We introduce a new dataset and benchmarking protocol that is insensitive to the accumulative error of other protocols. To this end, we create testing frame pairs of increasing difficulty and measure the pose estimation error separately for each of them. This approach gives new insights and allows to accurately study the performance of each feature or method without employing a full tracking pipeline. Following this protocol, we evaluate various directional distances in the context of silhouette-based 3d hand tracking, expressed as special cases of a generalized Chamfer distance form. An appropriate parameter setup is proposed for each of them, and a comparative study reveals the best performing method in this context.

pdf Supplementary Project Page link (url) DOI Project Page [BibTex]

pdf Supplementary Project Page link (url) DOI Project Page [BibTex]


Thumb xl iccv13
Dynamic Probabilistic Volumetric Models

Ulusoy, A. O., Biris, O., Mundy, J. L.

In ICCV, pages: 505-512, 2013 (inproceedings)

Abstract
This paper presents a probabilistic volumetric framework for image based modeling of general dynamic 3-d scenes. The framework is targeted towards high quality modeling of complex scenes evolving over thousands of frames. Extensive storage and computational resources are required in processing large scale space-time (4-d) data. Existing methods typically store separate 3-d models at each time step and do not address such limitations. A novel 4-d representation is proposed that adaptively subdivides in space and time to explain the appearance of 3-d dynamic surfaces. This representation is shown to achieve compression of 4-d data and provide efficient spatio-temporal processing. The advances of the proposed framework is demonstrated on standard datasets using free-viewpoint video and 3-d tracking applications.

video pdf DOI [BibTex]

video pdf DOI [BibTex]


Thumb xl apcom1
Model Reconstruction of Patient-Specific Cardiac Mesh from Segmented Contour Lines

C. W. Lim, Y. Su, S. Y. Yeo, G. M. Ng, V. T. Nguyen, L. Zhong, R. S. Tan, K. K. Poh, P. Chai,

In Asia Pacific Congress on Computational Mechanics, 2013 (inproceedings)

Abstract
We propose an automatic algorithm for the reconstruction of a set of patient-specific dynamic cardiac mesh model with 1-to-1 mesh correspondence over the whole cardiac cycle. This work focus on both the reconstruction technique of the initial 3D model of the heart and also the consistent mapping of the vertex positions throughout all the 3D meshes. This process is technically more challenging due to the wide interval spacing between MRI images as compared to CT images, making overlapping blood vessels much harder to discern. We propose a tree-based connectivity data structure to perform a filtering process to eliminate weak connections between contours on adjacent slices. The reconstructed 3D model from the first time step is used as a base template model, and deformed to fit the segmented contours in the next time step. Our algorithm has been tested on an actual acquisition of cardiac MRI images over one cardiac cycle.

[BibTex]

[BibTex]


Thumb xl pic cdc iccv13
A Generic Deformation Model for Dense Non-Rigid Surface Registration: a Higher-Order MRF-based Approach

Zeng, Y., Wang, C., Gu, X., Samaras, D., Paragios, N.

In IEEE International Conference on Computer Vision (ICCV), pages: 3360~3367, 2013 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl ncmrf cvpr2013
Nonlinearly Constrained MRFs: Exploring the Intrinsic Dimensions of Higher-Order Cliques

Zeng, Y., Wang, C., Soatto, S., Yau, S.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl training faces
Random Forests for Real Time 3D Face Analysis

Fanelli, G., Dantone, M., Gall, J., Fossati, A., van Gool, L.

International Journal of Computer Vision, 101(3):437-458, Springer, 2013 (article)

Abstract
We present a random forest-based framework for real time head pose estimation from depth images and extend it to localize a set of facial features in 3D. Our algorithm takes a voting approach, where each patch extracted from the depth image can directly cast a vote for the head pose or each of the facial features. Our system proves capable of handling large rotations, partial occlusions, and the noisy depth data acquired using commercial sensors. Moreover, the algorithm works on each frame independently and achieves real time performance without resorting to parallel computations on a GPU. We present extensive experiments on publicly available, challenging datasets and present a new annotated head pose database recorded using a Microsoft Kinect.

data and code publisher's site pdf DOI Project Page [BibTex]

data and code publisher's site pdf DOI Project Page [BibTex]


Thumb xl humans3tracking
Markerless Motion Capture of Multiple Characters Using Multi-view Image Segmentation

Liu, Y., Gall, J., Stoll, C., Dai, Q., Seidel, H., Theobalt, C.

Transactions on Pattern Analysis and Machine Intelligence, 35(11):2720-2735, 2013 (article)

Abstract
Capturing the skeleton motion and detailed time-varying surface geometry of multiple, closely interacting peoples is a very challenging task, even in a multicamera setup, due to frequent occlusions and ambiguities in feature-to-person assignments. To address this task, we propose a framework that exploits multiview image segmentation. To this end, a probabilistic shape and appearance model is employed to segment the input images and to assign each pixel uniquely to one person. Given the articulated template models of each person and the labeled pixels, a combined optimization scheme, which splits the skeleton pose optimization problem into a local one and a lower dimensional global one, is applied one by one to each individual, followed with surface estimation to capture detailed nonrigid deformations. We show on various sequences that our approach can capture the 3D motion of humans accurately even if they move rapidly, if they wear wide apparel, and if they are engaged in challenging multiperson motions, including dancing, wrestling, and hugging.

data and video pdf DOI Project Page [BibTex]

data and video pdf DOI Project Page [BibTex]


Thumb xl perception
Viewpoint and pose in body-form adaptation

Sekunova, A., Black, M., Parkinson, L., Barton, J. J. S.

Perception, 42(2):176-186, 2013 (article)

Abstract
Faces and bodies are complex structures, perception of which can play important roles in person identification and inference of emotional state. Face representations have been explored using behavioural adaptation: in particular, studies have shown that face aftereffects show relatively broad tuning for viewpoint, consistent with origin in a high-level structural descriptor far removed from the retinal image. Our goals were to determine first, if body aftereffects also showed a degree of viewpoint invariance, and second if they also showed pose invariance, given that changes in pose create even more dramatic changes in the 2-D retinal image. We used a 3-D model of the human body to generate headless body images, whose parameters could be varied to generate different body forms, viewpoints, and poses. In the first experiment, subjects adapted to varying viewpoints of either slim or heavy bodies in a neutral stance, followed by test stimuli that were all front-facing. In the second experiment, we used the same front-facing bodies in neutral stance as test stimuli, but compared adaptation from bodies in the same neutral stance to adaptation with the same bodies in different poses. We found that body aftereffects were obtained over substantial viewpoint changes, with no significant decline in aftereffect magnitude with increasing viewpoint difference between adapting and test images. Aftereffects also showed transfer across one change in pose but not across another. We conclude that body representations may have more viewpoint invariance than faces, and demonstrate at least some transfer across pose, consistent with a high-level structural description. Keywords: aftereffect, shape, face, representation

pdf from publisher abstract pdf link (url) Project Page [BibTex]

pdf from publisher abstract pdf link (url) Project Page [BibTex]


Thumb xl embs1
Reconstructing patient-specific cardiac models from contours via Delaunay triangulation and graph-cuts

Min Wan, Calvin Lim, Junmei Zhang, Yi Su, Si Yong Yeo, Desheng Wang, Ru San Tan, Liang Zhong

In International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 2976-9, 2013 (inproceedings)

[BibTex]

[BibTex]


Thumb xl cinc1
Regional comparison of left ventricle systolic wall stress reveals intraregional uniformity in healthy subjects

Soo Kng Teo, Si Yong Yeo, May Ling Tan, Chi Wan Lim, Liang Zhong, Ru San Tan, Yi Su

In Computing in Cardiology Conference, pages: 575 - 578, 2013 (inproceedings)

Abstract
This study aimed to assess the feasibility of using the regional uniformity of the left ventricle (LV) wall stress (WS) to diagnose patients with myocardial infarction. We present a novel method using a similarity map that measures the degree of uniformity in nominal systolic WS across pairs of segments within the same patient. The values of the nominal WS are computed at each vertex point from a 1-to-1 corresponding mesh pair of the LV at the end-diastole (ED) and end-systole (ES) phases. The 3D geometries of the LV at ED and ES are reconstructed from border-delineated MRI images and the 1-to-1 mesh generated using a strain-energy minimization approach. The LV is then partitioned into 16 segments based on published clinical standard and the nominal WS histogram distribution for each of the segment was computed. A similarity index is then computed for each pair of histogram distributions to generate a 16-by-16 similarity map. Based on our initial study involving 12 MI patients and 9 controls, we observed uniformity for intra- regional comparisons in the controls compared against the patients. Our results suggest that the regional uniformity of the nominal systolic WS in the form of a similarity map can potentially be used as a discriminant between MI patients and normal controls.

[BibTex]

[BibTex]


Thumb xl 2013 ivc rkek teaser
Non-parametric hand pose estimation with object context

Romero, J., Kjellström, H., Ek, C. H., Kragic, D.

Image and Vision Computing , 31(8):555 - 564, 2013 (article)

Abstract
In the spirit of recent work on contextual recognition and estimation, we present a method for estimating the pose of human hands, employing information about the shape of the object in the hand. Despite the fact that most applications of human hand tracking involve grasping and manipulation of objects, the majority of methods in the literature assume a free hand, isolated from the surrounding environment. Occlusion of the hand from grasped objects does in fact often pose a severe challenge to the estimation of hand pose. In the presented method, object occlusion is not only compensated for, it contributes to the pose estimation in a contextual fashion; this without an explicit model of object shape. Our hand tracking method is non-parametric, performing a nearest neighbor search in a large database (.. entries) of hand poses with and without grasped objects. The system that operates in real time, is robust to self occlusions, object occlusions and segmentation errors, and provides full hand pose reconstruction from monocular video. Temporal consistency in hand pose is taken into account, without explicitly tracking the hand in the high-dim pose space. Experiments show the non-parametric method to outperform other state of the art regression methods, while operating at a significantly lower computational cost than comparable model-based hand tracking methods.

Publisher site pdf link (url) [BibTex]

Publisher site pdf link (url) [BibTex]

2009


Thumb xl teaser wacv2010
Ball Joints for Marker-less Human Motion Capture

Pons-Moll, G., Rosenhahn, B.

In IEEE Workshop on Applications of Computer Vision (WACV),, December 2009 (inproceedings)

pdf [BibTex]

2009

pdf [BibTex]


no image
Background Subtraction Based on Rank Constraint for Point Trajectories

Ahmad, A., Del Bue, A., Lima, P.

In pages: 1-3, October 2009 (inproceedings)

Abstract
This work deals with a background subtraction algorithm for a fish-eye lens camera having 3 degrees of freedom, 2 in translation and 1 in rotation. The core assumption in this algorithm is that the background is considered to be composed of a dominant static plane in the world frame. The novelty lies in developing a rank-constraint based background subtraction for equidistant projection model, a property of the fish-eye lens. A detail simulation result is presented to support the hypotheses explained in this paper.

link (url) [BibTex]

link (url) [BibTex]


Thumb xl teaser cinc
Parametric Modeling of the Beating Heart with Respiratory Motion Extracted from Magnetic Resonance Images

Pons-Moll, G., Crosas, C., Tadmor, G., MacLeod, R., Rosenhahn, B., Brooks, D.

In IEEE Computers in Cardiology (CINC), September 2009 (inproceedings)

[BibTex]

[BibTex]


Thumb xl ascc09
Computer cursor control by motor cortical signals in humans with tetraplegia

Kim, S., Simeral, J. D., Hochberg, L. R., Donoghue, J. P., Black, M. J.

In 7th Asian Control Conference, ASCC09, pages: 988-993, Hong Kong, China, August 2009 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl foe2009
Fields of Experts

Roth, S., Black, M. J.

International Journal of Computer Vision (IJCV), 82(2):205-29, April 2009 (article)

Abstract
We develop a framework for learning generic, expressive image priors that capture the statistics of natural scenes and can be used for a variety of machine vision tasks. The approach provides a practical method for learning high-order Markov random field (MRF) models with potential functions that extend over large pixel neighborhoods. These clique potentials are modeled using the Product-of-Experts framework that uses non-linear functions of many linear filter responses. In contrast to previous MRF approaches all parameters, including the linear filters themselves, are learned from training data. We demonstrate the capabilities of this Field-of-Experts model with two example applications, image denoising and image inpainting, which are implemented using a simple, approximate inference scheme. While the model is trained on a generic image database and is not tuned toward a specific application, we obtain results that compete with specialized techniques.

pdf pdf from publisher [BibTex]

pdf pdf from publisher [BibTex]


no image
Classification of colon polyps in NBI endoscopy using vascularization features

Stehle, T., Auer, R., Gross, S., Behrens, A., Wulff, J., Aach, T., Winograd, R., Trautwein, C., Tischendorf, J.

In Medical Imaging 2009: Computer-Aided Diagnosis, 7260, (Editors: N. Karssemeijer and M. L. Giger), SPIE, February 2009 (inproceedings)

Abstract
The evolution of colon cancer starts with colon polyps. There are two different types of colon polyps, namely hyperplasias and adenomas. Hyperplasias are benign polyps which are known not to evolve into cancer and, therefore, do not need to be removed. By contrast, adenomas have a strong tendency to become malignant. Therefore, they have to be removed immediately via polypectomy. For this reason, a method to differentiate reliably adenomas from hyperplasias during a preventive medical endoscopy of the colon (colonoscopy) is highly desirable. A recent study has shown that it is possible to distinguish both types of polyps visually by means of their vascularization. Adenomas exhibit a large amount of blood vessel capillaries on their surface whereas hyperplasias show only few of them. In this paper, we show the feasibility of computer-based classification of colon polyps using vascularization features. The proposed classification algorithm consists of several steps: For the critical part of vessel segmentation, we implemented and compared two segmentation algorithms. After a skeletonization of the detected blood vessel candidates, we used the results as seed points for the Fast Marching algorithm which is used to segment the whole vessel lumen. Subsequently, features are computed from this segmentation which are then used to classify the polyps. In leave-one-out tests on our polyp database (56 polyps), we achieve a correct classification rate of approximately 90%.

DOI [BibTex]

DOI [BibTex]


Thumb xl 3dim09
One-shot scanning using de bruijn spaced grids

Ulusoy, A., Calakli, F., Taubin, G.

In Computer Vision Workshops (ICCV Workshops), 2009 IEEE 12th International Conference on, pages: 1786-1792, IEEE, 2009 (inproceedings)

Abstract
In this paper we present a new one-shot method to reconstruct the shape of dynamic 3D objects and scenes based on active illumination. In common with other related prior-art methods, a static grid pattern is projected onto the scene, a video sequence of the illuminated scene is captured, a shape estimate is produced independently for each video frame, and the one-shot property is realized at the expense of space resolution. The main challenge in grid-based one-shot methods is to engineer the pattern and algorithms so that the correspondence between pattern grid points and their images can be established very fast and without uncertainty. We present an efficient one-shot method which exploits simple geometric constraints to solve the correspondence problem. We also introduce De Bruijn spaced grids, a novel grid pattern, and show with strong empirical data that the resulting scheme is much more robust compared to those based on uniform spaced grids.

pdf link (url) DOI [BibTex]

pdf link (url) DOI [BibTex]


Thumb xl iccv09
Estimating human shape and pose from a single image

Guan, P., Weiss, A., Balan, A., Black, M. J.

In Int. Conf. on Computer Vision, ICCV, pages: 1381-1388, 2009 (inproceedings)

pdf video - mov 25MB video - mp4 10MB YouTube Project Page [BibTex]

pdf video - mov 25MB video - mp4 10MB YouTube Project Page [BibTex]


Thumb xl screen shot 2012 02 21 at 15.56.00  2
On feature combination for multiclass object classification

Gehler, P., Nowozin, S.

In Proceedings of the Twelfth IEEE International Conference on Computer Vision, pages: 221-228, 2009, oral presentation (inproceedings)

project page, code, data GoogleScholar pdf DOI [BibTex]

project page, code, data GoogleScholar pdf DOI [BibTex]


Thumb xl tracking iccv09
Segmentation, Ordering and Multi-object Tracking Using Graphical Models

Wang, C., Gorce, M. D. L., Paragios, N.

In IEEE International Conference on Computer Vision (ICCV), 2009 (inproceedings)

pdf [BibTex]

pdf [BibTex]


no image
Evaluating the potential of primary motor and premotor cortex for mutltidimensional neuroprosthetic control of complete reaching and grasping actions

Vargas-Irwin, C. E., Yadollahpour, P., Shakhnarovich, G., Black, M. J., Donoghue, J. P.

2009 Abstract Viewer and Itinerary Planner. Society for Neuroscience, Society for Neuroscience, 2009, Online (conference)

[BibTex]

[BibTex]


Thumb xl thumb screen shot 2012 10 06 at 12.02.32 pm
Modeling and Evaluation of Human-to-Robot Mapping of Grasps

Romero, J., Kjellström, H., Kragic, D.

In International Conference on Advanced Robotics (ICAR), pages: 1-6, 2009 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


Thumb xl nips2009b
An additive latent feature model for transparent object recognition

Fritz, M., Black, M., Bradski, G., Karayev, S., Darrell, T.

In Advances in Neural Information Processing Systems 22, NIPS, pages: 558-566, MIT Press, 2009 (inproceedings)

pdf slides [BibTex]

pdf slides [BibTex]


Thumb xl screen shot 2012 06 06 at 11.24.14 am
Let the kernel figure it out; Principled learning of pre-processing for kernel classifiers

Gehler, P., Nowozin, S.

In Proceedings of the Conference on Computer Vision and Pattern Recognition (CVPR), pages: 2836-2843, IEEE Computer Society, 2009 (inproceedings)

doi project page pdf [BibTex]

doi project page pdf [BibTex]


Thumb xl thumb screen shot 2012 10 06 at 12.04.52 pm
Monocular Real-Time 3D Articulated Hand Pose Estimation

Romero, J., Kjellström, H., Kragic, D.

In IEEE-RAS International Conference on Humanoid Robots, pages: 87-92, 2009 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


Thumb xl snap
Grasp Recognition and Mapping on Humanoid Robots

Do, M., Romero, J., Kjellström, H., Azad, P., Asfour, T., Kragic, D., Dillmann, R.

In IEEE-RAS International Conference on Humanoid Robots, pages: 465-471, 2009 (inproceedings)

Pdf Video [BibTex]

Pdf Video [BibTex]


Thumb xl teaser wc
4D Cardiac Segmentation of the Epicardium and Left Ventricle

Pons-Moll, G., Tadmor, G., MacLeod, R. S., Rosenhahn, B., Brooks, D. H.

In World Congress of Medical Physics and Biomedical Engineering (WC), 2009 (inproceedings)

[BibTex]

[BibTex]


Thumb xl bmvc1
Geometric Potential Force for the Deformable Model

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In The 20th British Machine Vision Conference, pages: 1-11, 2009 (inproceedings)

Abstract
We propose a new external force field for deformable models which can be conve- niently generalized to high dimensions. The external force field is based on hypothesized interactions between the relative geometries of the deformable model and image gradi- ents. The evolution of the deformable model is solved using the level set method. The dynamic interaction forces between the geometries can greatly improve the deformable model performance in acquiring complex geometries and highly concave boundaries, and in dealing with weak image edges. The new deformable model can handle arbi- trary cross-boundary initializations. Here, we show that the proposed method achieve significant improvements when compared against existing state-of-the-art techniques.

[BibTex]

[BibTex]


Thumb xl ajp1
Left Ventricular Regional Wall Curvedness and Wall Stress in Patients with Ischemic Dilated Cardiomyopathy

Liang Zhong, Yi Su, Si Yong Yeo, Ru San Tan Dhanjoo Ghista, Ghassan Kassab

American Journal of Physiology – Heart and Circulatory Physiology, 296(3):H573-84, 2009 (article)

Abstract
Geometric remodeling of the left ventricle (LV) after myocardial infarction is associated with changes in myocardial wall stress. The objective of this study was to determine the regional curvatures and wall stress based on three-dimensional (3-D) reconstructions of the LV using MRI. Ten patients with ischemic dilated cardiomyopathy (IDCM) and 10 normal subjects underwent MRI scan. The IDCM patients also underwent delayed gadolinium-enhancement imaging to delineate the extent of myocardial infarct. Regional curvedness, local radii of curvature, and wall thickness were calculated. The percent curvedness change between end diastole and end systole was also calculated. In normal heart, a short- and long-axis two-dimensional analysis showed a 41 +/- 11% and 45 +/- 12% increase of the mean of peak systolic wall stress between basal and apical sections, respectively. However, 3-D analysis showed no significant difference in peak systolic wall stress from basal and apical sections (P = 0.298, ANOVA). LV shape differed between IDCM patients and normal subjects in several ways: LV shape was more spherical (sphericity index = 0.62 +/- 0.08 vs. 0.52 +/- 0.06, P < 0.05), curvedness at end diastole (mean for 16 segments = 0.034 +/- 0.0056 vs. 0.040 +/- 0.0071 mm(-1), P < 0.001) and end systole (mean for 16 segments = 0.037 +/- 0.0068 vs. 0.067 +/- 0.020 mm(-1), P < 0.001) was affected by infarction, and peak systolic wall stress was significantly increased at each segment in IDCM patients. The 3-D quantification of regional wall stress by cardiac MRI provides more precise evaluation of cardiac mechanics. Identification of regional curvedness and wall stresses helps delineate the mechanisms of LV remodeling in IDCM and may help guide therapeutic LV restoration.

[BibTex]

[BibTex]


Thumb xl cmbe
Level Set Based Automatic Segmentation of Human Aorta

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In International Conference on Computational & Mathematical Biomedical Engineering, pages: 242-245, 2009 (inproceedings)

[BibTex]

[BibTex]


Thumb xl mbec1
A Curvature-Based Approach for Left Ventricular Shape Analysis from Cardiac Magnetic Resonance Imaging

Si Yong Yeo, Liang Zhong, Yi Su, Ru San Tan, Dhanjoo Ghista

Medical & Biological Engineering & Computing, 47(3):313-322, 2009 (article)

Abstract
It is believed that left ventricular (LV) regional shape is indicative of LV regional function, and cardiac pathologies are often associated with regional alterations in ventricular shape. In this article, we present a set of procedures for evaluating regional LV surface shape from anatomically accurate models reconstructed from cardiac magnetic resonance (MR) images. LV surface curvatures are computed using local surface fitting method, which enables us to assess regional LV shape and its variation. Comparisons are made between normal and diseased hearts. It is illustrated that LV surface curvatures at different regions of the normal heart are higher than those of the diseased heart. Also, the normal heart experiences a larger change in regional curvedness during contraction than the diseased heart. It is believed that with a wide range of dataset being evaluated, this approach will provide a new and efficient way of quantifying LV regional function.

link (url) [BibTex]

link (url) [BibTex]


Thumb xl orthonormaity
In Defense of Orthonormality Constraints for Nonrigid Structure from Motion

Akhter, I., Sheikh, Y., Khan, S.

In Computer Vision and Pattern Recognition, 2009. CVPR 2009. IEEE Conference on, pages: 2447-2453, 2009 (inproceedings)

Abstract
In factorization approaches to nonrigid structure from motion, the 3D shape of a deforming object is usually modeled as a linear combination of a small number of basis shapes. The original approach to simultaneously estimate the shape basis and nonrigid structure exploited orthonormality constraints for metric rectification. Recently, it has been asserted that structure recovery through orthonormality constraints alone is inherently ambiguous and cannot result in a unique solution. This assertion has been accepted as conventional wisdom and is the justification of many remedial heuristics in literature. Our key contribution is to prove that orthonormality constraints are in fact sufficient to recover the 3D structure from image observations alone. We characterize the true nature of the ambiguity in using orthonormality constraints for the shape basis and show that it has no impact on structure reconstruction. We conclude from our experimentation that the primary challenge in using shape basis for nonrigid structure from motion is the difficulty in the optimization problem rather than the ambiguity in orthonormality constraints.

pdf [BibTex]

pdf [BibTex]


no image
Dynamic distortion correction for endoscopy systems with exchangeable optics

Stehle, T., Hennes, M., Gross, S., Behrens, A., Wulff, J., Aach, T.

In Bildverarbeitung für die Medizin 2009, pages: 142-146, Springer Berlin Heidelberg, 2009 (inproceedings)

Abstract
Endoscopic images are strongly affected by lens distortion caused by the use of wide angle lenses. In case of endoscopy systems with exchangeable optics, e.g. in bladder endoscopy or sinus endoscopy, the camera sensor and the optics do not form a rigid system but they can be shifted and rotated with respect to each other during an examination. This flexibility has a major impact on the location of the distortion centre as it is moved along with the optics. In this paper, we describe an algorithm for the dynamic correction of lens distortion in cystoscopy which is based on a one time calibration. For the compensation, we combine a conventional static method for distortion correction with an algorithm to detect the position and the orientation of the elliptic field of view. This enables us to estimate the position of the distortion centre according to the relative movement of camera and optics. Therewith, a distortion correction for arbitrary rotation angles and shifts becomes possible without performing static calibrations for every possible combination of shifts and angles beforehand.

link (url) DOI [BibTex]

link (url) DOI [BibTex]


no image
Computational mechanisms for the recognition of time sequences of images in the visual cortex

Tan, C., Jhuang, H., Singer, J., Serre, T., Sheinberg, D., Poggio, T.

Society for Neuroscience, 2009 (conference)

pdf [BibTex]

pdf [BibTex]


Thumb xl vriphys2009
Interactive Inverse Kinematics for Monocular Motion Estimation

Morten Engell-Norregaard, Soren Hauberg, Jerome Lapuyade, Kenny Erleben, Kim S. Pedersen

In The 6th Workshop on Virtual Reality Interaction and Physical Simulation (VRIPHYS), 2009 (inproceedings)

Conference site Paper site [BibTex]

Conference site Paper site [BibTex]


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A Comprehensive Grasp Taxonomy

Feix, T., Pawlik, R., Schmiedmayer, H., Romero, J., Kragic, D.

In Robotics, Science and Systems: Workshop on Understanding the Human Hand for Advancing Robotic Manipulation, 2009 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


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Population coding of ground truth motion in natural scenes in the early visual system

Stanley, G., Black, M. J., Lewis, J., Desbordes, G., Jin, J., Alonso, J.

COSYNE, 2009 (conference)

[BibTex]

[BibTex]


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Segmentation of Human Upper Airway Using a Level Set Based Deformable Model

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In The 13th Medical Image Understanding and Analysis, 2009 (inproceedings)

[BibTex]

[BibTex]


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Three Dimensional Monocular Human Motion Analysis in End-Effector Space

Soren Hauberg, Jerome Lapuyade, Morten Engell-Norregaard, Kenny Erleben, Kim S. Pedersen

In Energy Minimization Methods in Computer Vision and Pattern Recognition, 5681, pages: 235-248, Lecture Notes in Computer Science, (Editors: Cremers, Daniel and Boykov, Yuri and Blake, Andrew and Schmidt, Frank), Springer Berlin Heidelberg, 2009 (inproceedings)

Publishers site Paper site PDF [BibTex]

Publishers site Paper site PDF [BibTex]


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Decoding visual motion from correlated firing of thalamic neurons

Stanley, G. B., Black, M. J., Desbordes, G., Jin, J., Wang, Y., Alonso, J.

2009 Abstract Viewer and Itinerary Planner. Society for Neuroscience, Society for Neuroscience, 2009 (conference)

[BibTex]

[BibTex]

2005


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Representing cyclic human motion using functional analysis

Ormoneit, D., Black, M. J., Hastie, T., Kjellström, H.

Image and Vision Computing, 23(14):1264-1276, December 2005 (article)

Abstract
We present a robust automatic method for modeling cyclic 3D human motion such as walking using motion-capture data. The pose of the body is represented by a time-series of joint angles which are automatically segmented into a sequence of motion cycles. The mean and the principal components of these cycles are computed using a new algorithm that enforces smooth transitions between the cycles by operating in the Fourier domain. Key to this method is its ability to automatically deal with noise and missing data. A learned walking model is then exploited for Bayesian tracking of 3D human motion.

pdf pdf from publisher DOI [BibTex]

2005

pdf pdf from publisher DOI [BibTex]


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A quantitative evaluation of video-based 3D person tracking

Balan, A. O., Sigal, L., Black, M. J.

In The Second Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance, VS-PETS, pages: 349-356, October 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Inferring attentional state and kinematics from motor cortical firing rates

Wood, F., Prabhat, , Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1544-1547, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Motor cortical decoding using an autoregressive moving average model

Fisher, J., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1469-1472, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]