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2011


Thumb xl segmentation isbi11
Tagged Cardiac MR Image Segmentation Using Boundary & Regional-Support and Graph-based Deformable Priors

Xiang, B., Wang, C., Deux, J., Rahmouni, A., Paragios, N.

In IEEE International Symposium on Biomedical Imaging (ISBI), 2011 (inproceedings)

pdf [BibTex]

2011

pdf [BibTex]


Thumb xl multi nrsfm
Multiview Structure from Motion in Trajectory Space

Zaheer, A., Akhter, I., Mohammad, H. B., Marzban, S., Khan, S.

In Computer Vision (ICCV), 2011 IEEE International Conference on, pages: 2447-2453, 2011 (inproceedings)

Abstract
Most nonrigid objects exhibit temporal regularities in their deformations. Recently it was proposed that these regularities can be parameterized by assuming that the non- rigid structure lies in a small dimensional trajectory space. In this paper, we propose a factorization approach for 3D reconstruction from multiple static cameras under the com- pact trajectory subspace representation. Proposed factor- ization is analogous to rank-3 factorization of rigid struc- ture from motion problem, in transformed space. The benefit of our approach is that the 3D trajectory basis can be directly learned from the image observations. This also allows us to impute missing observations and denoise tracking errors without explicit estimation of the 3D structure. In contrast to standard triangulation based methods which require points to be visible in at least two cameras, our ap- proach can reconstruct points, which remain occluded even in all the cameras for quite a long time. This makes our solution especially suitable for occlusion handling in motion capture systems. We demonstrate robustness of our method on challenging real and synthetic scenarios.

pdf project page [BibTex]

pdf project page [BibTex]


Thumb xl scia2011
Unscented Kalman Filtering for Articulated Human Tracking

Anders Boesen Lindbo Larsen, Soren Hauberg, Kim S. Pedersen

In Image Analysis, 6688, pages: 228-237, Lecture Notes in Computer Science, (Editors: Heyden, Anders and Kahl, Fredrik), Springer Berlin Heidelberg, 2011 (inproceedings)

Publishers site PDF [BibTex]

Publishers site PDF [BibTex]


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Adaptation for perception of the human body: Investigations of transfer across viewpoint and pose

Sekunova, A., Black, M. J., Parkinson, L., Barton, J. S.

Vision Sciences Society, 2011 (conference)

[BibTex]

[BibTex]


Thumb xl icip1
Level Set Segmentation with Robust Image Gradient Energy and Statistical Shape Prior

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In IEEE International Conference on Image Processing, pages: 3397 - 3400, 2011 (inproceedings)

Abstract
We propose a new level set segmentation method with statistical shape prior using a variational approach. The image energy is derived from a robust image gradient feature. This gives the active contour a global representation of the geometric configuration, making it more robust to image noise, weak edges and initial configurations. Statistical shape information is incorporated using nonparametric shape density distribution, which allows the model to handle relatively large shape variations. Comparative examples using both synthetic and real images show the robustness and efficiency of the proposed method.

link (url) [BibTex]

link (url) [BibTex]


Thumb xl cmbve1
Variational Level Set Segmentation Using Shape Prior

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In International Conference on Mathematical and Computational Biomedical Engineering, 2011 (inproceedings)

[BibTex]

[BibTex]


Thumb xl hmdb snapshot1
HMDB: A Large Video Database for Human Motion Recognition

Kuhne, H., Jhuang, H., Garrote, E., Poggio, T., Serre, T.

In IEEE International Conference on Computer Vision (ICCV), 2011 (inproceedings)

code, webpage, dataset pdf [BibTex]

code, webpage, dataset pdf [BibTex]


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Context dependent changes in grip selectivity in primate ventral premotor cortex

Franquemont, L., Vargas-Irwin, C., Black, M., Donoghue, J.

2011 Abstract Viewer and Itinerary Planner, Online, Society for Neuroscience, 2011, Online (conference)

[BibTex]

[BibTex]


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Towards a freely moving animal model: Combining markerless multi-camera video capture and wirelessly transmitted neural recording for the analysis of walking

Foster, J., Freifeld, O., Nuyujukian, P., Ryu, S., Black, M., Shenoy, K.

2011 Abstract Viewer and Itinerary Planner, Society for Neuroscience, 2011, Online (conference)

Project Page [BibTex]

Project Page [BibTex]


Thumb xl dagm2011imagesmall
Shape and pose-invariant correspondences using probabilistic geodesic surface embedding

Tsoli, A., Black, M. J.

In 33rd Annual Symposium of the German Association for Pattern Recognition (DAGM), 6835, pages: 256-265, Lecture Notes in Computer Science, (Editors: Mester, Rudolf and Felsberg, Michael), Springer, 2011 (inproceedings)

Abstract
Correspondence between non-rigid deformable 3D objects provides a foundation for object matching and retrieval, recognition, and 3D alignment. Establishing 3D correspondence is challenging when there are non-rigid deformations or articulations between instances of a class. We present a method for automatically finding such correspondences that deals with significant variations in pose, shape and resolution between pairs of objects.We represent objects as triangular meshes and consider normalized geodesic distances as representing their intrinsic characteristics. Geodesic distances are invariant to pose variations and nearly invariant to shape variations when properly normalized. The proposed method registers two objects by optimizing a joint probabilistic model over a subset of vertex pairs between the objects. The model enforces preservation of geodesic distances between corresponding vertex pairs and inference is performed using loopy belief propagation in a hierarchical scheme. Additionally our method prefers solutions in which local shape information is consistent at matching vertices. We quantitatively evaluate our method and show that is is more accurate than a state of the art method.

pdf talk Project Page [BibTex]

pdf talk Project Page [BibTex]


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Visual orientation and direction selectivity through thalamic synchrony

Kelly, S., Stanley, G., Jin, J., Wang, Y., Desbordes, G., Wang, Q., Black, M., Alonso, J.

2011 Abstract Viewer and Itinerary Planner, Society for Neuroscience, 2011, Online (conference)

[BibTex]

[BibTex]


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Use of the BrainGate neural inteface system for more than five years by a woman with tetraplegia

Hochberg, L., Bacher, D., Barefoot, L., Berhanu, E., Black, M., Cash, S., Feldman, J., Gallivan, E., Homer, M., Jarosiewicz, B., King, B., Liu, J., Malik, W., Masse, N., Berge, J., Rosler, D., Schmansky, N., Simeral, J., Travers, B., Truccolo, W., Donoghue, J.

2011 Abstract Viewer and Itinerary Planner, Society for Neuroscience, 2011, Onine (conference)

[BibTex]

[BibTex]


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Extracting 3D Structures from Biomedical Data

Xianghua Xie, Si Yong Yeo, Igor Sazonov, Perumal Nithiarasu

Proceedings of the 5th International Conference on Bioinformatics and Biomedical Engineering, 2011 (conference)

[BibTex]

[BibTex]


Thumb xl illumination cvpr11
Illumination Estimation and Cast Shadow Detection through a Higher-order Graphical Model

Panagopoulos, A., Wang, C., Samaras, D., Paragios, N.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl femursegmentation miccai11
Pose-invariant 3D Proximal Femur Estimation through Bi-Planar Image Segmentation with Hierarchical Higher-Order Graph-based Priors

Wang, C., Boussaid, H., Simon, L., Lazennec, J., Paragios, N.

In International Conference, Medical Image Computing and Computer Assisted Intervention (MICCAI), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl sufacetracking cvpr11
Intrinsic Dense 3D Surface Tracking

Zeng, Y., Wang, C., Wang, Y., Gu, X., Samaras, D., Paragios, N.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl emmcvpr2012
Data-Driven Importance Distributions for Articulated Tracking

Soren Hauberg, Kim S. Pedersen

In Energy Minimization Methods in Computer Vision and Pattern Recognition, 6819, pages: 287-299, Lecture Notes in Computer Science, (Editors: Boykov, Yuri and Kahl, Fredrik and Lempitsky, Victor and Schmidt, Frank), Springer Berlin Heidelberg, 2011 (inproceedings)

Publishers site Code PDF Suppl. material [BibTex]

Publishers site Code PDF Suppl. material [BibTex]


Thumb xl kdcv2011 teaser
A Physically Natural Metric for Human Motion and the Associated Brownian Motion Model

Soren Hauberg, Kim Steenstrup Pedersen

In 1st IEEE Workshop on Kernels and Distances for Computer Vision (ICCV workshop), 2011 (inproceedings)

Workshop link [BibTex]

Workshop link [BibTex]


Thumb xl thumb system1
Virtual Visual Servoing for Real-Time Robot Pose Estimation

Gratal, X., Romero, J., Kragic, D.

In International Federation of Automatic Control World Congress, IFAC, 2011 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


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Cooperative Localization Based on Visually Shared Objects

Lima, P., Santos, P., Oliveira, R., Ahmad, A., Santos, J.

In RoboCup 2010: Robot Soccer World Cup XIV, pages: 350-361, Lecture Notes in Computer Science ; 6556, Springer, Berlin, Germany, 2011 (inproceedings)

Abstract
In this paper we describe a cooperative localization algorithm based on a modification of the Monte Carlo Localization algorithm where, when a robot detects it is lost, particles are spread not uniformly in the state space, but rather according to the information on the location of an object whose distance and bearing is measured by the lost robot. The object location is provided by other robots of the same team using explicit (wireless) communication. Results of application of the method to a team of real robots are presented.

DOI [BibTex]

DOI [BibTex]


Thumb xl sufacematching ssvm11
Discrete Minimum Distortion Correspondence Problems for Non-rigid Shape Matching

Wang, C., Bronstein, M. M., Bronstein, A. M., Paragios, N.

In International Conference on Scale Space and Variational Methods in Computer Vision (SSVM), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl viewpointinvariantmodel iccv11.
Viewpoint Invariant 3D Landmark Model Inference from Monocular 2D Images Using Higher-Order Priors

Wang, C., Zeng, Y., Simon, L., Kakadiaris, I., Samaras, D., Paragios, N.

In IEEE International Conference on Computer Vision (ICCV), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Correspondence estimation from non-rigid motion information

Wulff, J., Lotz, T., Stehle, T., Aach, T., Chase, J. G.

In Proc. SPIE, Proc. SPIE, (Editors: B. M. Dawant, D. R. Haynor), SPIE, 2011 (inproceedings)

Abstract
The DIET (Digital Image Elasto Tomography) system is a novel approach to screen for breast cancer using only optical imaging information of the surface of a vibrating breast. 3D tracking of skin surface motion without the requirement of external markers is desirable. A novel approach to establish point correspondences using pure skin images is presented here. Instead of the intensity, motion is used as the primary feature, which can be extracted using optical flow algorithms. Taking sequences of multiple frames into account, this motion information alone is accurate and unambiguous enough to allow for a 3D reconstruction of the breast surface. Two approaches, direct and probabilistic, for this correspondence estimation are presented here, suitable for different levels of calibration information accuracy. Reconstructions show that the results obtained using these methods are comparable in accuracy to marker-based methods while considerably increasing resolution. The presented method has high potential in optical tissue deformation and motion sensing.

pdf link (url) DOI [BibTex]

pdf link (url) DOI [BibTex]


Thumb xl icann2011
An Empirical Study on the Performance of Spectral Manifold Learning Techniques

Peter Mysling, Soren Hauberg, Kim S. Pedersen

In Artificial Neural Networks and Machine Learning – ICANN 2011, 6791, pages: 347-354, Lecture Notes in Computer Science, (Editors: Honkela, Timo and Duch, Włodzisław and Girolami, Mark and Kaski, Samuel), Springer Berlin Heidelberg, 2011 (inproceedings)

Publishers site PDF [BibTex]

Publishers site PDF [BibTex]


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Separation of visual object features and grasp strategy in primate ventral premotor cortex

Vargas-Irwin, C., Franquemont, L., Black, M., Donoghue, J.

Neural Control of Movement, 21st Annual Conference, 2011 (conference)

[BibTex]

[BibTex]

2007


Thumb xl floweval
A Database and Evaluation Methodology for Optical Flow

Baker, S., Scharstein, D., Lewis, J.P., Roth, S., Black, M.J., Szeliski, R.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf [BibTex]

2007

pdf [BibTex]


Thumb xl iccv07b
Shining a light on human pose: On shadows, shading and the estimation of pose and shape,

Balan, A., Black, M. J., Haussecker, H., Sigal, L.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf YouTube [BibTex]

pdf YouTube [BibTex]


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Ensemble spiking activity as a source of cortical control signals in individuals with tetraplegia

Simeral, J. D., Kim, S. P., Black, M. J., Donoghue, J. P., Hochberg, L. R.

Biomedical Engineering Society, BMES, september 2007 (conference)

[BibTex]

[BibTex]


Thumb xl cvpr07scape
Detailed human shape and pose from images

Balan, A., Sigal, L., Black, M. J., Davis, J., Haussecker, H.

In IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, pages: 1-8, Minneapolis, June 2007 (inproceedings)

pdf YouTube [BibTex]

pdf YouTube [BibTex]


Thumb xl aperture
Decoding grasp aperture from motor-cortical population activity

Artemiadis, P., Shakhnarovich, G., Vargas-Irwin, C., Donoghue, J. P., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 518-521, May 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl ner07
Multi-state decoding of point-and-click control signals from motor cortical activity in a human with tetraplegia

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Friehs, G., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 486-489, May 2007 (inproceedings)

Abstract
Basic neural-prosthetic control of a computer cursor has been recently demonstrated by Hochberg et al. [1] using the BrainGate system (Cyberkinetics Neurotechnology Systems, Inc.). While these results demonstrate the feasibility of intracortically-driven prostheses for humans with paralysis, a practical cursor-based computer interface requires more precise cursor control and the ability to “click” on areas of interest. Here we present a practical point and click device that decodes both continuous states (e.g. cursor kinematics) and discrete states (e.g. click state) from single neural population in human motor cortex. We describe a probabilistic multi-state decoder and the necessary training paradigms that enable point and click cursor control by a human with tetraplegia using an implanted microelectrode array. We present results from multiple recording sessions and quantify the point and click performance.

pdf [BibTex]

pdf [BibTex]


Thumb xl screen shot 2012 06 06 at 11.20.23 am
Deterministic Annealing for Multiple-Instance Learning

Gehler, P., Chapelle, O.

In Artificial Intelligence and Statistics (AIStats), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Point-and-click cursor control by a person with tetraplegia using an intracortical neural interface system

Kim, S., Simeral, J. D., Hochberg, L. R., Friehs, G., Donoghue, J. P., Black, M. J.

Program No. 517.2. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Thumb xl screen shot 2012 02 23 at 1.59.51 pm
Learning Appearances with Low-Rank SVM

Wolf, L., Jhuang, H., Hazan, T.

In Conference on Computer Vision and Pattern Recognition (CVPR), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Neural correlates of grip aperture in primary motor cortex

Vargas-Irwin, C., Shakhnarovich, G., Artemiadis, P., Donoghue, J. P., Black, M. J.

Program No. 517.10. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


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Directional tuning in motor cortex of a person with ALS

Simeral, J. D., Donoghue, J. P., Black, M. J., Friehs, G. M., Brown, R. H., Krivickas, L. S., Hochberg, L. R.

Program No. 517.4. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Thumb xl srf
Steerable random fields

(Best Paper Award, INI-Graphics Net, 2008)

Roth, S., Black, M. J.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Toward standardized assessment of pointing devices for brain-computer interfaces

Donoghue, J., Simeral, J., Kim, S., G.M. Friehs, L. H., Black, M.

Program No. 517.16. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Thumb xl alg
A Biologically Inspired System for Action Recognition

Jhuang, H., Serre, T., Wolf, L., Poggio, T.

In International Conference on Computer Vision (ICCV), 2007 (inproceedings)

code pdf [BibTex]

code pdf [BibTex]


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AREADNE Research in Encoding And Decoding of Neural Ensembles

Shakhnarovich, G., Hochberg, L. R., Donoghue, J. P., Stein, J., Brown, R. H., Krivickas, L. S., Friehs, G. M., Black, M. J.

Program No. 517.8. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]

2005


Thumb xl pets 2005 copy
A quantitative evaluation of video-based 3D person tracking

Balan, A. O., Sigal, L., Black, M. J.

In The Second Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance, VS-PETS, pages: 349-356, October 2005 (inproceedings)

pdf [BibTex]

2005

pdf [BibTex]


Thumb xl embs05
Inferring attentional state and kinematics from motor cortical firing rates

Wood, F., Prabhat, , Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1544-1547, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl arma
Motor cortical decoding using an autoregressive moving average model

Fisher, J., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1469-1472, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl cvpr2005
Fields of Experts: A framework for learning image priors

Roth, S., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition, 2, pages: 860-867, June 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl iccv05roth
On the spatial statistics of optical flow

(Marr Prize, Honorable Mention)

Roth, S., Black, M. J.

In International Conf. on Computer Vision, International Conf. on Computer Vision, pages: 42-49, 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Thumb xl nips05
Modeling neural population spiking activity with Gibbs distributions

Wood, F., Roth, S., Black, M. J.

In Advances in Neural Information Processing Systems 18, pages: 1537-1544, 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


no image
Energy-based models of motor cortical population activity

Wood, F., Black, M.

Program No. 689.20. 2005 Abstract Viewer/Itinerary Planner, Society for Neuroscience, Washington, DC, 2005 (conference)

abstract [BibTex]

abstract [BibTex]

2003


Thumb xl iccv2003 copy
Image statistics and anisotropic diffusion

Scharr, H., Black, M. J., Haussecker, H.

In Int. Conf. on Computer Vision, pages: 840-847, October 2003 (inproceedings)

pdf [BibTex]

2003

pdf [BibTex]


Thumb xl switching2003
A switching Kalman filter model for the motor cortical coding of hand motion

Wu, W., Black, M. J., Mumford, D., Gao, Y., Bienenstock, E., Donoghue, J. P.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 2083-2086, September 2003 (inproceedings)

pdf [BibTex]

pdf [BibTex]