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2013


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Right Ventricle Segmentation by Temporal Information Constrained Gradient Vector Flow

X. Yang, S. Y. Yeo, Y. Su, C. Lim, M. Wan, L. Zhong, R. S. Tan

In IEEE International Conference on Systems, Man, and Cybernetics, 2013 (inproceedings)

Abstract
Evaluation of right ventricular (RV) structure and function is of importance in the management of most cardiac disorders. But the segmentation of RV has always been consid- ered challenging due to low contrast of the myocardium with surrounding and high shape variability of the RV. In this paper, we present a 2D + T active contour model for segmentation and tracking of RV endocardium on cardiac magnetic resonance (MR) images. To take into account the temporal information between adjacent frames, we propose to integrate the time-dependent constraints into the energy functional of the classical gradient vector flow (GVF). As a result, the prior motion knowledge of RV is introduced in the deformation process through the time-dependent constraints in the proposed GVF-T model. A weighting parameter is introduced to adjust the weight of the temporal information against the image data itself. The additional external edge forces retrieved from the temporal constraints may be useful for the RV segmentation, such that lead to a better segmentation performance. The effectiveness of the proposed approach is supported by experimental results on synthetic and cardiac MR images.

[BibTex]

2013

[BibTex]


A Comparison of Directional Distances for Hand Pose Estimation
A Comparison of Directional Distances for Hand Pose Estimation

Tzionas, D., Gall, J.

In German Conference on Pattern Recognition (GCPR), 8142, pages: 131-141, Lecture Notes in Computer Science, (Editors: Weickert, Joachim and Hein, Matthias and Schiele, Bernt), Springer, 2013 (inproceedings)

Abstract
Benchmarking methods for 3d hand tracking is still an open problem due to the difficulty of acquiring ground truth data. We introduce a new dataset and benchmarking protocol that is insensitive to the accumulative error of other protocols. To this end, we create testing frame pairs of increasing difficulty and measure the pose estimation error separately for each of them. This approach gives new insights and allows to accurately study the performance of each feature or method without employing a full tracking pipeline. Following this protocol, we evaluate various directional distances in the context of silhouette-based 3d hand tracking, expressed as special cases of a generalized Chamfer distance form. An appropriate parameter setup is proposed for each of them, and a comparative study reveals the best performing method in this context.

pdf Supplementary Project Page link (url) DOI Project Page [BibTex]

pdf Supplementary Project Page link (url) DOI Project Page [BibTex]


{Dynamic Probabilistic Volumetric Models}
Dynamic Probabilistic Volumetric Models

Ulusoy, A. O., Biris, O., Mundy, J. L.

In ICCV, pages: 505-512, 2013 (inproceedings)

Abstract
This paper presents a probabilistic volumetric framework for image based modeling of general dynamic 3-d scenes. The framework is targeted towards high quality modeling of complex scenes evolving over thousands of frames. Extensive storage and computational resources are required in processing large scale space-time (4-d) data. Existing methods typically store separate 3-d models at each time step and do not address such limitations. A novel 4-d representation is proposed that adaptively subdivides in space and time to explain the appearance of 3-d dynamic surfaces. This representation is shown to achieve compression of 4-d data and provide efficient spatio-temporal processing. The advances of the proposed framework is demonstrated on standard datasets using free-viewpoint video and 3-d tracking applications.

video pdf DOI [BibTex]

video pdf DOI [BibTex]


Model Reconstruction of Patient-Specific Cardiac Mesh from Segmented Contour Lines
Model Reconstruction of Patient-Specific Cardiac Mesh from Segmented Contour Lines

C. W. Lim, Y. Su, S. Y. Yeo, G. M. Ng, V. T. Nguyen, L. Zhong, R. S. Tan, K. K. Poh, P. Chai,

In Asia Pacific Congress on Computational Mechanics, 2013 (inproceedings)

Abstract
We propose an automatic algorithm for the reconstruction of a set of patient-specific dynamic cardiac mesh model with 1-to-1 mesh correspondence over the whole cardiac cycle. This work focus on both the reconstruction technique of the initial 3D model of the heart and also the consistent mapping of the vertex positions throughout all the 3D meshes. This process is technically more challenging due to the wide interval spacing between MRI images as compared to CT images, making overlapping blood vessels much harder to discern. We propose a tree-based connectivity data structure to perform a filtering process to eliminate weak connections between contours on adjacent slices. The reconstructed 3D model from the first time step is used as a base template model, and deformed to fit the segmented contours in the next time step. Our algorithm has been tested on an actual acquisition of cardiac MRI images over one cardiac cycle.

[BibTex]

[BibTex]


A Generic Deformation Model for Dense Non-Rigid Surface Registration: a Higher-Order MRF-based Approach
A Generic Deformation Model for Dense Non-Rigid Surface Registration: a Higher-Order MRF-based Approach

Zeng, Y., Wang, C., Gu, X., Samaras, D., Paragios, N.

In IEEE International Conference on Computer Vision (ICCV), pages: 3360~3367, 2013 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Nonlinearly Constrained {MRFs}: Exploring the Intrinsic Dimensions   of Higher-Order Cliques
Nonlinearly Constrained MRFs: Exploring the Intrinsic Dimensions of Higher-Order Cliques

Zeng, Y., Wang, C., Soatto, S., Yau, S.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2013 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Reconstructing patient-specific cardiac models from contours via Delaunay triangulation and graph-cuts
Reconstructing patient-specific cardiac models from contours via Delaunay triangulation and graph-cuts

Min Wan, Calvin Lim, Junmei Zhang, Yi Su, Si Yong Yeo, Desheng Wang, Ru San Tan, Liang Zhong

In International Conference of the IEEE Engineering in Medicine and Biology Society, pages: 2976-9, 2013 (inproceedings)

[BibTex]

[BibTex]


Regional comparison of left ventricle systolic wall stress reveals intraregional uniformity in healthy subjects
Regional comparison of left ventricle systolic wall stress reveals intraregional uniformity in healthy subjects

Soo Kng Teo, Si Yong Yeo, May Ling Tan, Chi Wan Lim, Liang Zhong, Ru San Tan, Yi Su

In Computing in Cardiology Conference, pages: 575 - 578, 2013 (inproceedings)

Abstract
This study aimed to assess the feasibility of using the regional uniformity of the left ventricle (LV) wall stress (WS) to diagnose patients with myocardial infarction. We present a novel method using a similarity map that measures the degree of uniformity in nominal systolic WS across pairs of segments within the same patient. The values of the nominal WS are computed at each vertex point from a 1-to-1 corresponding mesh pair of the LV at the end-diastole (ED) and end-systole (ES) phases. The 3D geometries of the LV at ED and ES are reconstructed from border-delineated MRI images and the 1-to-1 mesh generated using a strain-energy minimization approach. The LV is then partitioned into 16 segments based on published clinical standard and the nominal WS histogram distribution for each of the segment was computed. A similarity index is then computed for each pair of histogram distributions to generate a 16-by-16 similarity map. Based on our initial study involving 12 MI patients and 9 controls, we observed uniformity for intra- regional comparisons in the controls compared against the patients. Our results suggest that the regional uniformity of the nominal systolic WS in the form of a similarity map can potentially be used as a discriminant between MI patients and normal controls.

[BibTex]

[BibTex]

2007


A Database and Evaluation Methodology for Optical Flow
A Database and Evaluation Methodology for Optical Flow

Baker, S., Scharstein, D., Lewis, J.P., Roth, S., Black, M.J., Szeliski, R.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf [BibTex]

2007

pdf [BibTex]


Shining a light on human pose: On shadows, shading and the estimation of pose and shape,
Shining a light on human pose: On shadows, shading and the estimation of pose and shape,

Balan, A., Black, M. J., Haussecker, H., Sigal, L.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf YouTube [BibTex]

pdf YouTube [BibTex]


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Ensemble spiking activity as a source of cortical control signals in individuals with tetraplegia

Simeral, J. D., Kim, S. P., Black, M. J., Donoghue, J. P., Hochberg, L. R.

Biomedical Engineering Society, BMES, september 2007 (conference)

[BibTex]

[BibTex]


Detailed human shape and pose from images
Detailed human shape and pose from images

Balan, A., Sigal, L., Black, M. J., Davis, J., Haussecker, H.

In IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, pages: 1-8, Minneapolis, June 2007 (inproceedings)

Abstract
Much of the research on video-based human motion capture assumes the body shape is known a priori and is represented coarsely (e.g. using cylinders or superquadrics to model limbs). These body models stand in sharp contrast to the richly detailed 3D body models used by the graphics community. Here we propose a method for recovering such models directly from images. Specifically, we represent the body using a recently proposed triangulated mesh model called SCAPE which employs a low-dimensional, but detailed, parametric model of shape and pose-dependent deformations that is learned from a database of range scans of human bodies. Previous work showed that the parameters of the SCAPE model could be estimated from marker-based motion capture data. Here we go further to estimate the parameters directly from image data. We define a cost function between image observations and a hypothesized mesh and formulate the problem as optimization over the body shape and pose parameters using stochastic search. Our results show that such rich generative models enable the automatic recovery of detailed human shape and pose from images.

pdf YouTube [BibTex]

pdf YouTube [BibTex]


Decoding grasp aperture from motor-cortical population activity
Decoding grasp aperture from motor-cortical population activity

Artemiadis, P., Shakhnarovich, G., Vargas-Irwin, C., Donoghue, J. P., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 518-521, May 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Multi-state decoding of point-and-click control signals from motor cortical activity in a human with tetraplegia
Multi-state decoding of point-and-click control signals from motor cortical activity in a human with tetraplegia

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Friehs, G., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 486-489, May 2007 (inproceedings)

Abstract
Basic neural-prosthetic control of a computer cursor has been recently demonstrated by Hochberg et al. [1] using the BrainGate system (Cyberkinetics Neurotechnology Systems, Inc.). While these results demonstrate the feasibility of intracortically-driven prostheses for humans with paralysis, a practical cursor-based computer interface requires more precise cursor control and the ability to “click” on areas of interest. Here we present a practical point and click device that decodes both continuous states (e.g. cursor kinematics) and discrete states (e.g. click state) from single neural population in human motor cortex. We describe a probabilistic multi-state decoder and the necessary training paradigms that enable point and click cursor control by a human with tetraplegia using an implanted microelectrode array. We present results from multiple recording sessions and quantify the point and click performance.

pdf [BibTex]

pdf [BibTex]


Deterministic Annealing for Multiple-Instance Learning
Deterministic Annealing for Multiple-Instance Learning

Gehler, P., Chapelle, O.

In Artificial Intelligence and Statistics (AIStats), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Point-and-click cursor control by a person with tetraplegia using an intracortical neural interface system

Kim, S., Simeral, J. D., Hochberg, L. R., Friehs, G., Donoghue, J. P., Black, M. J.

Program No. 517.2. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Learning Appearances with Low-Rank SVM
Learning Appearances with Low-Rank SVM

Wolf, L., Jhuang, H., Hazan, T.

In Conference on Computer Vision and Pattern Recognition (CVPR), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Neural correlates of grip aperture in primary motor cortex

Vargas-Irwin, C., Shakhnarovich, G., Artemiadis, P., Donoghue, J. P., Black, M. J.

Program No. 517.10. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


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Directional tuning in motor cortex of a person with ALS

Simeral, J. D., Donoghue, J. P., Black, M. J., Friehs, G. M., Brown, R. H., Krivickas, L. S., Hochberg, L. R.

Program No. 517.4. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Steerable random fields
Steerable random fields

(Best Paper Award, INI-Graphics Net, 2008)

Roth, S., Black, M. J.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Toward standardized assessment of pointing devices for brain-computer interfaces

Donoghue, J., Simeral, J., Kim, S., G.M. Friehs, L. H., Black, M.

Program No. 517.16. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


A Biologically Inspired System for Action Recognition
A Biologically Inspired System for Action Recognition

Jhuang, H., Serre, T., Wolf, L., Poggio, T.

In International Conference on Computer Vision (ICCV), 2007 (inproceedings)

code pdf [BibTex]

code pdf [BibTex]


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AREADNE Research in Encoding And Decoding of Neural Ensembles

Shakhnarovich, G., Hochberg, L. R., Donoghue, J. P., Stein, J., Brown, R. H., Krivickas, L. S., Friehs, G. M., Black, M. J.

Program No. 517.8. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]

2000


Stochastic tracking of {3D} human figures using {2D} image motion
Stochastic tracking of 3D human figures using 2D image motion

(Winner of the 2010 Koenderink Prize for Fundamental Contributions in Computer Vision)

Sidenbladh, H., Black, M. J., Fleet, D.

In European Conference on Computer Vision, ECCV, pages: 702-718, LNCS 1843, Springer Verlag, Dublin, Ireland, June 2000 (inproceedings)

Abstract
A probabilistic method for tracking 3D articulated human figures in monocular image sequences is presented. Within a Bayesian framework, we define a generative model of image appearance, a robust likelihood function based on image gray level differences, and a prior probability distribution over pose and joint angles that models how humans move. The posterior probability distribution over model parameters is represented using a discrete set of samples and is propagated over time using particle filtering. The approach extends previous work on parameterized optical flow estimation to exploit a complex 3D articulated motion model. It also extends previous work on human motion tracking by including a perspective camera model, by modeling limb self occlusion, and by recovering 3D motion from a monocular sequence. The explicit posterior probability distribution represents ambiguities due to image matching, model singularities, and perspective projection. The method relies only on a frame-to-frame assumption of brightness constancy and hence is able to track people under changing viewpoints, in grayscale image sequences, and with complex unknown backgrounds.

pdf code [BibTex]

2000

pdf code [BibTex]


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Functional analysis of human motion data

Ormoneit, D., Hastie, T., Black, M. J.

In In Proc. 5th World Congress of the Bernoulli Society for Probability and Mathematical Statistics and 63rd Annual Meeting of the Institute of Mathematical Statistics, Guanajuato, Mexico, May 2000 (inproceedings)

[BibTex]

[BibTex]


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Stochastic modeling and tracking of human motion

Ormoneit, D., Sidenbladh, H., Black, M. J., Hastie, T.

Learning 2000, Snowbird, UT, April 2000 (conference)

abstract [BibTex]

abstract [BibTex]


A framework for modeling the appearance of {3D} articulated figures
A framework for modeling the appearance of 3D articulated figures

Sidenbladh, H., De la Torre, F., Black, M. J.

In Int. Conf. on Automatic Face and Gesture Recognition, pages: 368-375, Grenoble, France, March 2000 (inproceedings)

pdf [BibTex]

pdf [BibTex]

1994


Estimating multiple independent motions in segmented images using parametric models with local deformations
Estimating multiple independent motions in segmented images using parametric models with local deformations

Black, M. J., Jepson, A.

In Workshop on Non-rigid and Articulate Motion, pages: 220-227, Austin, Texas, November 1994 (inproceedings)

pdf abstract [BibTex]

1994

pdf abstract [BibTex]


Time to contact from active tracking of motion boundaries
Time to contact from active tracking of motion boundaries

Ju, X., Black, M. J.

In Intelligent Robots and Computer Vision XIII: 3D Vision, Product Inspection, and Active Vision, pages: 26-37, Proc. SPIE 2354, Boston, Massachusetts, November 1994 (inproceedings)

pdf abstract [BibTex]

pdf abstract [BibTex]


The outlier process: Unifying line processes and robust statistics
The outlier process: Unifying line processes and robust statistics

Black, M., Rangarajan, A.

In IEEE Conf. on Computer Vision and Pattern Recognition, CVPR’94, pages: 15-22, Seattle, WA, June 1994 (inproceedings)

pdf abstract [BibTex]

pdf abstract [BibTex]


Recursive non-linear estimation of discontinuous flow fields
Recursive non-linear estimation of discontinuous flow fields

Black, M.

In Proc. Third European Conf. on Computer Vision, ECCV’94,, pages: 138-145, LNCS 800, Springer Verlag, Sweden, May 1994 (inproceedings)

pdf abstract [BibTex]

pdf abstract [BibTex]