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2011


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Use of the BrainGate neural inteface system for more than five years by a woman with tetraplegia

Hochberg, L., Bacher, D., Barefoot, L., Berhanu, E., Black, M., Cash, S., Feldman, J., Gallivan, E., Homer, M., Jarosiewicz, B., King, B., Liu, J., Malik, W., Masse, N., Berge, J., Rosler, D., Schmansky, N., Simeral, J., Travers, B., Truccolo, W., Donoghue, J.

2011 Abstract Viewer and Itinerary Planner, Society for Neuroscience, 2011, Onine (conference)

[BibTex]

2011

[BibTex]


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Extracting 3D Structures from Biomedical Data

Xianghua Xie, Si Yong Yeo, Igor Sazonov, Perumal Nithiarasu

Proceedings of the 5th International Conference on Bioinformatics and Biomedical Engineering, 2011 (conference)

[BibTex]

[BibTex]


Model-Based Pose Estimation
Model-Based Pose Estimation

Pons-Moll, G., Rosenhahn, B.

In Visual Analysis of Humans: Looking at People, pages: 139-170, 9, (Editors: T. Moeslund, A. Hilton, V. Krueger, L. Sigal), Springer, 2011 (inbook)

book page pdf [BibTex]

book page pdf [BibTex]


Illumination Estimation and Cast Shadow Detection through a Higher-order Graphical Model
Illumination Estimation and Cast Shadow Detection through a Higher-order Graphical Model

Panagopoulos, A., Wang, C., Samaras, D., Paragios, N.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Pose-invariant 3{D} Proximal Femur Estimation through Bi-Planar Image  Segmentation with Hierarchical Higher-Order Graph-based Priors
Pose-invariant 3D Proximal Femur Estimation through Bi-Planar Image Segmentation with Hierarchical Higher-Order Graph-based Priors

Wang, C., Boussaid, H., Simon, L., Lazennec, J., Paragios, N.

In International Conference, Medical Image Computing and Computer Assisted Intervention (MICCAI), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Intrinsic Dense 3{D} Surface Tracking
Intrinsic Dense 3D Surface Tracking

Zeng, Y., Wang, C., Wang, Y., Gu, X., Samaras, D., Paragios, N.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Data-Driven Importance Distributions for Articulated Tracking
Data-Driven Importance Distributions for Articulated Tracking

Soren Hauberg, Kim S. Pedersen

In Energy Minimization Methods in Computer Vision and Pattern Recognition, 6819, pages: 287-299, Lecture Notes in Computer Science, (Editors: Boykov, Yuri and Kahl, Fredrik and Lempitsky, Victor and Schmidt, Frank), Springer Berlin Heidelberg, 2011 (inproceedings)

Publishers site Code PDF Suppl. material [BibTex]

Publishers site Code PDF Suppl. material [BibTex]


A Physically Natural Metric for Human Motion and the Associated Brownian Motion Model
A Physically Natural Metric for Human Motion and the Associated Brownian Motion Model

Soren Hauberg, Kim Steenstrup Pedersen

In 1st IEEE Workshop on Kernels and Distances for Computer Vision (ICCV workshop), 2011 (inproceedings)

Workshop link [BibTex]

Workshop link [BibTex]


Virtual Visual Servoing for Real-Time Robot Pose Estimation
Virtual Visual Servoing for Real-Time Robot Pose Estimation

Gratal, X., Romero, J., Kragic, D.

In International Federation of Automatic Control World Congress, IFAC, 2011 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


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Cooperative Localization Based on Visually Shared Objects

Lima, P., Santos, P., Oliveira, R., Ahmad, A., Santos, J.

In RoboCup 2010: Robot Soccer World Cup XIV, pages: 350-361, Lecture Notes in Computer Science ; 6556, Springer, Berlin, Germany, 2011 (inproceedings)

Abstract
In this paper we describe a cooperative localization algorithm based on a modification of the Monte Carlo Localization algorithm where, when a robot detects it is lost, particles are spread not uniformly in the state space, but rather according to the information on the location of an object whose distance and bearing is measured by the lost robot. The object location is provided by other robots of the same team using explicit (wireless) communication. Results of application of the method to a team of real robots are presented.

DOI [BibTex]

DOI [BibTex]


Discrete Minimum Distortion Correspondence Problems for Non-rigid   Shape Matching
Discrete Minimum Distortion Correspondence Problems for Non-rigid Shape Matching

Wang, C., Bronstein, M. M., Bronstein, A. M., Paragios, N.

In International Conference on Scale Space and Variational Methods in Computer Vision (SSVM), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Viewpoint Invariant 3{D} Landmark Model Inference from Monocular 2{D}  Images Using Higher-Order Priors
Viewpoint Invariant 3D Landmark Model Inference from Monocular 2D Images Using Higher-Order Priors

Wang, C., Zeng, Y., Simon, L., Kakadiaris, I., Samaras, D., Paragios, N.

In IEEE International Conference on Computer Vision (ICCV), 2011 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Correspondence estimation from non-rigid motion information

Wulff, J., Lotz, T., Stehle, T., Aach, T., Chase, J. G.

In Proc. SPIE, Proc. SPIE, (Editors: B. M. Dawant, D. R. Haynor), SPIE, 2011 (inproceedings)

Abstract
The DIET (Digital Image Elasto Tomography) system is a novel approach to screen for breast cancer using only optical imaging information of the surface of a vibrating breast. 3D tracking of skin surface motion without the requirement of external markers is desirable. A novel approach to establish point correspondences using pure skin images is presented here. Instead of the intensity, motion is used as the primary feature, which can be extracted using optical flow algorithms. Taking sequences of multiple frames into account, this motion information alone is accurate and unambiguous enough to allow for a 3D reconstruction of the breast surface. Two approaches, direct and probabilistic, for this correspondence estimation are presented here, suitable for different levels of calibration information accuracy. Reconstructions show that the results obtained using these methods are comparable in accuracy to marker-based methods while considerably increasing resolution. The presented method has high potential in optical tissue deformation and motion sensing.

pdf link (url) DOI [BibTex]

pdf link (url) DOI [BibTex]


An Empirical Study on the Performance of Spectral Manifold Learning Techniques
An Empirical Study on the Performance of Spectral Manifold Learning Techniques

Peter Mysling, Soren Hauberg, Kim S. Pedersen

In Artificial Neural Networks and Machine Learning – ICANN 2011, 6791, pages: 347-354, Lecture Notes in Computer Science, (Editors: Honkela, Timo and Duch, Włodzisław and Girolami, Mark and Kaski, Samuel), Springer Berlin Heidelberg, 2011 (inproceedings)

Publishers site PDF [BibTex]

Publishers site PDF [BibTex]


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Separation of visual object features and grasp strategy in primate ventral premotor cortex

Vargas-Irwin, C., Franquemont, L., Black, M., Donoghue, J.

Neural Control of Movement, 21st Annual Conference, 2011 (conference)

[BibTex]

[BibTex]

2007


A Database and Evaluation Methodology for Optical Flow
A Database and Evaluation Methodology for Optical Flow

Baker, S., Scharstein, D., Lewis, J.P., Roth, S., Black, M.J., Szeliski, R.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf [BibTex]

2007

pdf [BibTex]


Shining a light on human pose: On shadows, shading and the estimation of pose and shape,
Shining a light on human pose: On shadows, shading and the estimation of pose and shape,

Balan, A., Black, M. J., Haussecker, H., Sigal, L.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, October 2007 (inproceedings)

pdf YouTube [BibTex]

pdf YouTube [BibTex]


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Ensemble spiking activity as a source of cortical control signals in individuals with tetraplegia

Simeral, J. D., Kim, S. P., Black, M. J., Donoghue, J. P., Hochberg, L. R.

Biomedical Engineering Society, BMES, september 2007 (conference)

[BibTex]

[BibTex]


Detailed human shape and pose from images
Detailed human shape and pose from images

Balan, A., Sigal, L., Black, M. J., Davis, J., Haussecker, H.

In IEEE Conf. on Computer Vision and Pattern Recognition, CVPR, pages: 1-8, Minneapolis, June 2007 (inproceedings)

Abstract
Much of the research on video-based human motion capture assumes the body shape is known a priori and is represented coarsely (e.g. using cylinders or superquadrics to model limbs). These body models stand in sharp contrast to the richly detailed 3D body models used by the graphics community. Here we propose a method for recovering such models directly from images. Specifically, we represent the body using a recently proposed triangulated mesh model called SCAPE which employs a low-dimensional, but detailed, parametric model of shape and pose-dependent deformations that is learned from a database of range scans of human bodies. Previous work showed that the parameters of the SCAPE model could be estimated from marker-based motion capture data. Here we go further to estimate the parameters directly from image data. We define a cost function between image observations and a hypothesized mesh and formulate the problem as optimization over the body shape and pose parameters using stochastic search. Our results show that such rich generative models enable the automatic recovery of detailed human shape and pose from images.

pdf YouTube [BibTex]

pdf YouTube [BibTex]


Decoding grasp aperture from motor-cortical population activity
Decoding grasp aperture from motor-cortical population activity

Artemiadis, P., Shakhnarovich, G., Vargas-Irwin, C., Donoghue, J. P., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 518-521, May 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Multi-state decoding of point-and-click control signals from motor cortical activity in a human with tetraplegia
Multi-state decoding of point-and-click control signals from motor cortical activity in a human with tetraplegia

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Friehs, G., Black, M. J.

In The 3rd International IEEE EMBS Conference on Neural Engineering, pages: 486-489, May 2007 (inproceedings)

Abstract
Basic neural-prosthetic control of a computer cursor has been recently demonstrated by Hochberg et al. [1] using the BrainGate system (Cyberkinetics Neurotechnology Systems, Inc.). While these results demonstrate the feasibility of intracortically-driven prostheses for humans with paralysis, a practical cursor-based computer interface requires more precise cursor control and the ability to “click” on areas of interest. Here we present a practical point and click device that decodes both continuous states (e.g. cursor kinematics) and discrete states (e.g. click state) from single neural population in human motor cortex. We describe a probabilistic multi-state decoder and the necessary training paradigms that enable point and click cursor control by a human with tetraplegia using an implanted microelectrode array. We present results from multiple recording sessions and quantify the point and click performance.

pdf [BibTex]

pdf [BibTex]


Deterministic Annealing for Multiple-Instance Learning
Deterministic Annealing for Multiple-Instance Learning

Gehler, P., Chapelle, O.

In Artificial Intelligence and Statistics (AIStats), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Point-and-click cursor control by a person with tetraplegia using an intracortical neural interface system

Kim, S., Simeral, J. D., Hochberg, L. R., Friehs, G., Donoghue, J. P., Black, M. J.

Program No. 517.2. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Probabilistically modeling and decoding neural population activity in motor cortex
Probabilistically modeling and decoding neural population activity in motor cortex

Black, M. J., Donoghue, J. P.

In Toward Brain-Computer Interfacing, pages: 147-159, (Editors: Dornhege, G. and del R. Millan, J. and Hinterberger, T. and McFarland, D. and Muller, K.-R.), MIT Press, London, 2007 (incollection)

pdf [BibTex]

pdf [BibTex]


Learning Appearances with Low-Rank SVM
Learning Appearances with Low-Rank SVM

Wolf, L., Jhuang, H., Hazan, T.

In Conference on Computer Vision and Pattern Recognition (CVPR), 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Neural correlates of grip aperture in primary motor cortex

Vargas-Irwin, C., Shakhnarovich, G., Artemiadis, P., Donoghue, J. P., Black, M. J.

Program No. 517.10. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


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Directional tuning in motor cortex of a person with ALS

Simeral, J. D., Donoghue, J. P., Black, M. J., Friehs, G. M., Brown, R. H., Krivickas, L. S., Hochberg, L. R.

Program No. 517.4. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


Steerable random fields
Steerable random fields

(Best Paper Award, INI-Graphics Net, 2008)

Roth, S., Black, M. J.

In Int. Conf. on Computer Vision, ICCV, pages: 1-8, Rio de Janeiro, Brazil, 2007 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Toward standardized assessment of pointing devices for brain-computer interfaces

Donoghue, J., Simeral, J., Kim, S., G.M. Friehs, L. H., Black, M.

Program No. 517.16. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]


A Biologically Inspired System for Action Recognition
A Biologically Inspired System for Action Recognition

Jhuang, H., Serre, T., Wolf, L., Poggio, T.

In International Conference on Computer Vision (ICCV), 2007 (inproceedings)

code pdf [BibTex]

code pdf [BibTex]


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AREADNE Research in Encoding And Decoding of Neural Ensembles

Shakhnarovich, G., Hochberg, L. R., Donoghue, J. P., Stein, J., Brown, R. H., Krivickas, L. S., Friehs, G. M., Black, M. J.

Program No. 517.8. 2007 Abstract Viewer and Itinerary Planner, Society for Neuroscience, San Diego, CA, 2007, Online (conference)

[BibTex]

[BibTex]

2005


A quantitative evaluation of video-based {3D} person tracking
A quantitative evaluation of video-based 3D person tracking

Balan, A. O., Sigal, L., Black, M. J.

In The Second Joint IEEE International Workshop on Visual Surveillance and Performance Evaluation of Tracking and Surveillance, VS-PETS, pages: 349-356, October 2005 (inproceedings)

pdf [BibTex]

2005

pdf [BibTex]


Inferring attentional state and kinematics from motor cortical firing rates
Inferring attentional state and kinematics from motor cortical firing rates

Wood, F., Prabhat, , Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1544-1547, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Motor cortical decoding using an autoregressive moving average model
Motor cortical decoding using an autoregressive moving average model

Fisher, J., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 1469-1472, September 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Fields of Experts: A framework for learning image priors
Fields of Experts: A framework for learning image priors

Roth, S., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition, 2, pages: 860-867, June 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


On the spatial statistics of optical flow
On the spatial statistics of optical flow

(Marr Prize, Honorable Mention)

Roth, S., Black, M. J.

In International Conf. on Computer Vision, International Conf. on Computer Vision, pages: 42-49, 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Modeling neural population spiking activity with {Gibbs} distributions
Modeling neural population spiking activity with Gibbs distributions

Wood, F., Roth, S., Black, M. J.

In Advances in Neural Information Processing Systems 18, pages: 1537-1544, 2005 (inproceedings)

pdf [BibTex]

pdf [BibTex]


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Energy-based models of motor cortical population activity

Wood, F., Black, M.

Program No. 689.20. 2005 Abstract Viewer/Itinerary Planner, Society for Neuroscience, Washington, DC, 2005 (conference)

abstract [BibTex]

abstract [BibTex]

2004


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Automatic spike sorting for neural decoding

Wood, F. D., Fellows, M., Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 4009-4012, September 2004 (inproceedings)

pdf [BibTex]

2004

pdf [BibTex]


Closed-loop neural control of cursor motion using a {Kalman} filter
Closed-loop neural control of cursor motion using a Kalman filter

Wu, W., Shaikhouni, A., Donoghue, J. P., Black, M. J.

In Proc. IEEE Engineering in Medicine and Biology Society, pages: 4126-4129, September 2004 (inproceedings)

pdf [BibTex]

pdf [BibTex]


The dense estimation of motion and appearance in layers
The dense estimation of motion and appearance in layers

Yalcin, H., Black, M. J., Fablet, R.

In IEEE Workshop on Image and Video Registration, June 2004 (inproceedings)

pdf [BibTex]

pdf [BibTex]


{3D} human limb detection using space carving and multi-view eigen models
3D human limb detection using space carving and multi-view eigen models

Bhatia, S., Sigal, L., Isard, M., Black, M. J.

In IEEE Workshop on Articulated and Nonrigid Motion, June 2004 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Tracking loose-limbed people
Tracking loose-limbed people

Sigal, L., Bhatia, S., Roth, S., Black, M. J., Isard, M.

In IEEE Conf. on Computer Vision and Pattern Recognition, 1, pages: 421-428, June 2004 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Gibbs likelihoods for {Bayesian} tracking
Gibbs likelihoods for Bayesian tracking

Roth, S., Sigal, L., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition, 1, pages: 886-893, June 2004 (inproceedings)

pdf [BibTex]

pdf [BibTex]


Development of neural motor prostheses for humans
Development of neural motor prostheses for humans

Donoghue, J., Nurmikko, A., Friehs, G., Black, M.

In Advances in Clinical Neurophysiology, (Editors: Hallett, M. and Phillips, L.H. and Schomer, D.L. and Massey, J.M.), Supplements to Clinical Neurophysiology Vol. 57, 2004 (incollection)

pdf [BibTex]

pdf [BibTex]


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A direct brain-machine interface for 2D cursor control using a Kalman filter

Shaikhouni, A., Wu, W., Moris, D. S., Donoghue, J. P., Black, M. J.

Society for Neuroscience, 2004, Online (conference)

abstract [BibTex]

abstract [BibTex]

1998


The Digital Office: Overview
The Digital Office: Overview

Black, M., Berard, F., Jepson, A., Newman, W., Saund, E., Socher, G., Taylor, M.

In AAAI Spring Symposium on Intelligent Environments, pages: 1-6, Stanford, March 1998 (inproceedings)

pdf [BibTex]

1998

pdf [BibTex]


A framework for modeling appearance change in image sequences
A framework for modeling appearance change in image sequences

Black, M. J., Fleet, D. J., Yacoob, Y.

In Sixth International Conf. on Computer Vision, ICCV’98, pages: 660-667, Mumbai, India, January 1998 (inproceedings)

Abstract
Image "appearance" may change over time due to a variety of causes such as 1) object or camera motion; 2) generic photometric events including variations in illumination (e.g. shadows) and specular reflections; and 3) "iconic changes" which are specific to the objects being viewed and include complex occlusion events and changes in the material properties of the objects. We propose a general framework for representing and recovering these "appearance changes" in an image sequence as a "mixture" of different causes. The approach generalizes previous work on optical flow to provide a richer description of image events and more reliable estimates of image motion.

pdf video [BibTex]

pdf video [BibTex]


Parameterized modeling and recognition of activities
Parameterized modeling and recognition of activities

Yacoob, Y., Black, M. J.

In Sixth International Conf. on Computer Vision, ICCV’98, pages: 120-127, Mumbai, India, January 1998 (inproceedings)

Abstract
A framework for modeling and recognition of temporal activities is proposed. The modeling of sets of exemplar activities is achieved by parameterizing their representation in the form of principal components. Recognition of spatio-temporal variants of modeled activities is achieved by parameterizing the search in the space of admissible transformations that the activities can undergo. Experiments on recognition of articulated and deformable object motion from image motion parameters are presented.

pdf [BibTex]

pdf [BibTex]