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2012


An Analysis of Successful Approaches to Human Pose Estimation
An Analysis of Successful Approaches to Human Pose Estimation

Lassner, C.

An Analysis of Successful Approaches to Human Pose Estimation, University of Augsburg, University of Augsburg, May 2012 (mastersthesis)

Abstract
The field of Human Pose Estimation is developing fast and lately leaped forward with the release of the Kinect system. That system reaches a very good perfor- mance for pose estimation using 3D scene information, however pose estimation from 2D color images is not solved reliably yet. There is a vast amount of pub- lications trying to reach this aim, but no compilation of important methods and solution strategies. The aim of this thesis is to fill this gap: it gives an introductory overview over important techniques by analyzing four current (2012) publications in detail. They are chosen such, that during their analysis many frequently used techniques for Human Pose Estimation can be explained. The thesis includes two introductory chapters with a definition of Human Pose Estimation and exploration of the main difficulties, as well as a detailed explanation of frequently used methods. A final chapter presents some ideas on how parts of the analyzed approaches can be recombined and shows some open questions that can be tackled in future work. The thesis is therefore a good entry point to the field of Human Pose Estimation and enables the reader to get an impression of the current state-of-the-art.

pdf [BibTex]

2012

pdf [BibTex]


Bilinear Spatiotemporal Basis Models
Bilinear Spatiotemporal Basis Models

Akhter, I., Simon, T., Khan, S., Matthews, I., Sheikh, Y.

ACM Transactions on Graphics (TOG), 31(2):17, ACM, April 2012 (article)

Abstract
A variety of dynamic objects, such as faces, bodies, and cloth, are represented in computer graphics as a collection of moving spatial landmarks. Spatiotemporal data is inherent in a number of graphics applications including animation, simulation, and object and camera tracking. The principal modes of variation in the spatial geometry of objects are typically modeled using dimensionality reduction techniques, while concurrently, trajectory representations like splines and autoregressive models are widely used to exploit the temporal regularity of deformation. In this article, we present the bilinear spatiotemporal basis as a model that simultaneously exploits spatial and temporal regularity while maintaining the ability to generalize well to new sequences. This factorization allows the use of analytical, predefined functions to represent temporal variation (e.g., B-Splines or the Discrete Cosine Transform) resulting in efficient model representation and estimation. The model can be interpreted as representing the data as a linear combination of spatiotemporal sequences consisting of shape modes oscillating over time at key frequencies. We apply the bilinear model to natural spatiotemporal phenomena, including face, body, and cloth motion data, and compare it in terms of compaction, generalization ability, predictive precision, and efficiency to existing models. We demonstrate the application of the model to a number of graphics tasks including labeling, gap-filling, denoising, and motion touch-up.

pdf project page link (url) [BibTex]

pdf project page link (url) [BibTex]


Exploiting pedestrian interaction via global optimization and social behaviors
Exploiting pedestrian interaction via global optimization and social behaviors

Leal-Taixé, L., Pons-Moll, G., Rosenhahn, B.

In Theoretic Foundations of Computer Vision: Outdoor and Large-Scale Real-World Scene Analysis, Springer, April 2012 (incollection)

pdf [BibTex]

pdf [BibTex]


HUMIM Software for Articulated Tracking
HUMIM Software for Articulated Tracking

Soren Hauberg, Kim S. Pedersen

(01/2012), Department of Computer Science, University of Copenhagen, January 2012 (techreport)

Code PDF [BibTex]

Code PDF [BibTex]


A geometric framework for statistics on trees
A geometric framework for statistics on trees

Aasa Feragen, Mads Nielsen, Soren Hauberg, Pechin Lo, Marleen de Bruijne, Francois Lauze

(11/02), Department of Computer Science, University of Copenhagen, January 2012 (techreport)

PDF [BibTex]

PDF [BibTex]


Data-driven Manifolds for Outdoor Motion Capture
Data-driven Manifolds for Outdoor Motion Capture

Pons-Moll, G., Leal-Taix’e, L., Gall, J., Rosenhahn, B.

In Outdoor and Large-Scale Real-World Scene Analysis, 7474, pages: 305-328, LNCS, (Editors: Dellaert, Frank and Frahm, Jan-Michael and Pollefeys, Marc and Rosenhahn, Bodo and Leal-Taix’e, Laura), Springer, 2012 (incollection)

video publisher's site pdf Project Page [BibTex]

video publisher's site pdf Project Page [BibTex]


{High Resolution Surface Reconstruction from Multi-view Aerial Imagery}
High Resolution Surface Reconstruction from Multi-view Aerial Imagery

Calakli, F., Ulusoy, A. O., Restrepo, M. I., Taubin, G., Mundy, J. L.

In 3D Imaging Modeling Processing Visualization Transmission (3DIMPVT), pages: 25-32, IEEE, 2012 (inproceedings)

Abstract
This paper presents a novel framework for surface reconstruction from multi-view aerial imagery of large scale urban scenes, which combines probabilistic volumetric modeling with smooth signed distance surface estimation, to produce very detailed and accurate surfaces. Using a continuous probabilistic volumetric model which allows for explicit representation of ambiguities caused by moving objects, reflective surfaces, areas of constant appearance, and self-occlusions, the algorithm learns the geometry and appearance of a scene from a calibrated image sequence. An online implementation of Bayesian learning precess in GPUs significantly reduces the time required to process a large number of images. The probabilistic volumetric model of occupancy is subsequently used to estimate a smooth approximation of the signed distance function to the surface. This step, which reduces to the solution of a sparse linear system, is very efficient and scalable to large data sets. The proposed algorithm is shown to produce high quality surfaces in challenging aerial scenes where previous methods make large errors in surface localization. The general applicability of the algorithm beyond aerial imagery is confirmed against the Middlebury benchmark.

Video pdf link (url) DOI [BibTex]

Video pdf link (url) DOI [BibTex]


Detection and Tracking of Occluded People
Detection and Tracking of Occluded People

(Best Paper Award)

Tang, S., Andriluka, M., Schiele, B.

In British Machine Vision Conference (BMVC), 2012, BMVC Best Paper Award (inproceedings)

PDF [BibTex]

PDF [BibTex]


3{D} Cardiac Segmentation with Pose-Invariant Higher-Order {MRFs}
3D Cardiac Segmentation with Pose-Invariant Higher-Order MRFs

Xiang, B., Wang, C., Deux, J., Rahmouni, A., Paragios, N.

In IEEE International Symposium on Biomedical Imaging (ISBI), 2012 (inproceedings)

[BibTex]

[BibTex]


Real-time Facial Feature Detection using Conditional Regression Forests
Real-time Facial Feature Detection using Conditional Regression Forests

Dantone, M., Gall, J., Fanelli, G., van Gool, L.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pages: 2578-2585, IEEE, Providence, RI, USA, 2012 (inproceedings)

code pdf Project Page [BibTex]

code pdf Project Page [BibTex]


Latent Hough Transform for Object Detection
Latent Hough Transform for Object Detection

Razavi, N., Gall, J., Kohli, P., van Gool, L.

In European Conference on Computer Vision (ECCV), 7574, pages: 312-325, LNCS, Springer, 2012 (inproceedings)

pdf Project Page [BibTex]

pdf Project Page [BibTex]


Destination Flow for Crowd Simulation
Destination Flow for Crowd Simulation

Pellegrini, S., Gall, J., Sigal, L., van Gool, L.

In Workshop on Analysis and Retrieval of Tracked Events and Motion in Imagery Streams, 7585, pages: 162-171, LNCS, Springer, 2012 (inproceedings)

pdf Project Page [BibTex]

pdf Project Page [BibTex]


A metric for comparing the anthropomorphic motion capability of artificial hands
A metric for comparing the anthropomorphic motion capability of artificial hands

Feix, T., Romero, J., Ek, C. H., Schmiedmayer, H., Kragic, D.

IEEE RAS Transactions on Robotics, TRO, pages: 974-980, 2012 (article)

Publisher site Human Grasping Database Project [BibTex]

Publisher site Human Grasping Database Project [BibTex]


From Deformations to Parts: Motion-based Segmentation of {3D} Objects
From Deformations to Parts: Motion-based Segmentation of 3D Objects

Ghosh, S., Sudderth, E., Loper, M., Black, M.

In Advances in Neural Information Processing Systems 25 (NIPS), pages: 2006-2014, (Editors: P. Bartlett and F.C.N. Pereira and C.J.C. Burges and L. Bottou and K.Q. Weinberger), MIT Press, 2012 (inproceedings)

Abstract
We develop a method for discovering the parts of an articulated object from aligned meshes of the object in various three-dimensional poses. We adapt the distance dependent Chinese restaurant process (ddCRP) to allow nonparametric discovery of a potentially unbounded number of parts, while simultaneously guaranteeing a spatially connected segmentation. To allow analysis of datasets in which object instances have varying 3D shapes, we model part variability across poses via affine transformations. By placing a matrix normal-inverse-Wishart prior on these affine transformations, we develop a ddCRP Gibbs sampler which tractably marginalizes over transformation uncertainty. Analyzing a dataset of humans captured in dozens of poses, we infer parts which provide quantitatively better deformation predictions than conventional clustering methods.

pdf supplemental code poster link (url) Project Page [BibTex]

pdf supplemental code poster link (url) Project Page [BibTex]


The Ankyrin 3 (ANK3) Bipolar Disorder Gene Regulates Psychiatric-related Behaviors that are Modulated by Lithium and Stress
The Ankyrin 3 (ANK3) Bipolar Disorder Gene Regulates Psychiatric-related Behaviors that are Modulated by Lithium and Stress

Leussis, M., Berry-Scott, E., Saito, M., Jhuang, H., Haan, G., Alkan, O., Luce, C., Madison, J., Sklar, P., Serre, T., Root, D., Petryshen, T.

Biological Psychiatry , 2012 (article)

Prepublication Article Abstract [BibTex]

Prepublication Article Abstract [BibTex]


Segmentation of Vessel Geometries from Medical Images Using GPF Deformable Model
Segmentation of Vessel Geometries from Medical Images Using GPF Deformable Model

Si Yong Yeo, Xianghua Xie, Igor Sazonov, Perumal Nithiarasu

In International Conference on Pattern Recognition Applications and Methods, 2012 (inproceedings)

Abstract
We present a method for the reconstruction of vascular geometries from medical images. Image denoising is performed using vessel enhancing diffusion, which can smooth out image noise and enhance vessel structures. The Canny edge detection technique which produces object edges with single pixel width is used for accurate detection of the lumen boundaries. The image gradients are then used to compute the geometric potential field which gives a global representation of the geometric configuration. The deformable model uses a regional constraint to suppress calcified regions for accurate segmentation of the vessel geometries. The proposed framework show high accuracy when applied to the segmentation of the carotid arteries from CT images.

[BibTex]

[BibTex]


Scan-Based Flow Modelling in Human Upper Airways
Scan-Based Flow Modelling in Human Upper Airways

Perumal Nithiarasu, Igor Sazonov, Si Yong Yeo

In Patient-Specific Modeling in Tomorrow’s Medicine, pages: 241 - 280, 0, (Editors: Amit Gefen), Springer, 2012 (inbook)

[BibTex]

[BibTex]


SuperFloxels: A Mid-Level Representation for Video Sequences
SuperFloxels: A Mid-Level Representation for Video Sequences

Ravichandran, A., Wang, C., Raptis, M., Soatto, S.

In Analysis and Retrieval of Tracked Events and Motion in Imagery Streams Workshop (ARTEMIS) (in conjunction with ECCV 2012), 2012 (inproceedings)

pdf [BibTex]

pdf [BibTex]


 Implicit Active Contours for N-Dimensional Biomedical Image Segmentation
Implicit Active Contours for N-Dimensional Biomedical Image Segmentation

Si Yong Yeo

In IEEE International Conference on Systems, Man, and Cybernetics, pages: 2855 - 2860, 2012 (inproceedings)

Abstract
The segmentation of shapes from biomedical images has a wide range of uses such as image based modelling and bioimage analysis. In this paper, an active contour model is proposed for the segmentation of N-dimensional biomedical images. The proposed model uses a curvature smoothing flow and an image attraction force derived from the interactions between the geometries of the active contour model and the image objects. The active contour model is formulated using the level set method so as to handle topological changes automatically. The magnitude and orientation of the image attraction force is based on the relative geometric configurations between the active contour model and the image object boundaries. The vector force field is therefore dynamic, and the active contour model can propagate through narrow structures to segment complex shapes efficiently. The proposed model utilizes pixel interactions across the image domain, which gives a coherent representation of the image object shapes. This allows the active contour model to be robust to image noise and weak object edges. The proposed model is compared against widely used active contour models in the segmentation of anatomical shapes from biomedical images. It is shown that the proposed model has several advantages over existing techniques and can be used for the segmentation of biomedical images efficiently.

[BibTex]

[BibTex]


Interactive Object Detection
Interactive Object Detection

Yao, A., Gall, J., Leistner, C., van Gool, L.

In IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pages: 3242-3249, IEEE, Providence, RI, USA, 2012 (inproceedings)

video pdf Project Page [BibTex]

video pdf Project Page [BibTex]


Real Time 3D Head Pose Estimation: Recent Achievements and Future Challenges
Real Time 3D Head Pose Estimation: Recent Achievements and Future Challenges

Fanelli, G., Gall, J., van Gool, L.

In 5th International Symposium on Communications, Control and Signal Processing (ISCCSP), 2012 (inproceedings)

data and code pdf Project Page [BibTex]

data and code pdf Project Page [BibTex]


Motion Capture of Hands in Action using Discriminative Salient Points
Motion Capture of Hands in Action using Discriminative Salient Points

Ballan, L., Taneja, A., Gall, J., van Gool, L., Pollefeys, M.

In European Conference on Computer Vision (ECCV), 7577, pages: 640-653, LNCS, Springer, 2012 (inproceedings)

data video pdf supplementary Project Page [BibTex]

data video pdf supplementary Project Page [BibTex]


Sparsity Potentials for Detecting Objects with the Hough Transform
Sparsity Potentials for Detecting Objects with the Hough Transform

Razavi, N., Alvar, N., Gall, J., van Gool, L.

In British Machine Vision Conference (BMVC), pages: 11.1-11.10, (Editors: Bowden, Richard and Collomosse, John and Mikolajczyk, Krystian), BMVA Press, 2012 (inproceedings)

pdf Project Page [BibTex]

pdf Project Page [BibTex]


An Introduction to Random Forests for Multi-class Object Detection
An Introduction to Random Forests for Multi-class Object Detection

Gall, J., Razavi, N., van Gool, L.

In Outdoor and Large-Scale Real-World Scene Analysis, 7474, pages: 243-263, LNCS, (Editors: Dellaert, Frank and Frahm, Jan-Michael and Pollefeys, Marc and Rosenhahn, Bodo and Leal-Taix’e, Laura), Springer, 2012 (incollection)

code code for Hough forest publisher's site pdf Project Page [BibTex]

code code for Hough forest publisher's site pdf Project Page [BibTex]


Metric Learning from Poses for Temporal Clustering of Human Motion
Metric Learning from Poses for Temporal Clustering of Human Motion

L’opez-M’endez, A., Gall, J., Casas, J., van Gool, L.

In British Machine Vision Conference (BMVC), pages: 49.1-49.12, (Editors: Bowden, Richard and Collomosse, John and Mikolajczyk, Krystian), BMVA Press, 2012 (inproceedings)

video pdf Project Page Project Page [BibTex]

video pdf Project Page Project Page [BibTex]


Local Context Priors for Object Proposal Generation
Local Context Priors for Object Proposal Generation

Ristin, M., Gall, J., van Gool, L.

In Asian Conference on Computer Vision (ACCV), 7724, pages: 57-70, LNCS, Springer-Verlag, 2012 (inproceedings)

pdf DOI Project Page [BibTex]

pdf DOI Project Page [BibTex]


Home {3D} body scans from noisy image and range data
Home 3D body scans from noisy image and range data

Weiss, A., Hirshberg, D., Black, M. J.

In Consumer Depth Cameras for Computer Vision: Research Topics and Applications, pages: 99-118, 6, (Editors: Andrea Fossati and Juergen Gall and Helmut Grabner and Xiaofeng Ren and Kurt Konolige), Springer-Verlag, 2012 (incollection)

Project Page [BibTex]

Project Page [BibTex]


Layered segmentation and optical flow estimation over time
Layered segmentation and optical flow estimation over time

Sun, D., Sudderth, E., Black, M. J.

In IEEE Conf. on Computer Vision and Pattern Recognition (CVPR), pages: 1768-1775, IEEE, 2012 (inproceedings)

Abstract
Layered models provide a compelling approach for estimating image motion and segmenting moving scenes. Previous methods, however, have failed to capture the structure of complex scenes, provide precise object boundaries, effectively estimate the number of layers in a scene, or robustly determine the depth order of the layers. Furthermore, previous methods have focused on optical flow between pairs of frames rather than longer sequences. We show that image sequences with more frames are needed to resolve ambiguities in depth ordering at occlusion boundaries; temporal layer constancy makes this feasible. Our generative model of image sequences is rich but difficult to optimize with traditional gradient descent methods. We propose a novel discrete approximation of the continuous objective in terms of a sequence of depth-ordered MRFs and extend graph-cut optimization methods with new “moves” that make joint layer segmentation and motion estimation feasible. Our optimizer, which mixes discrete and continuous optimization, automatically determines the number of layers and reasons about their depth ordering. We demonstrate the value of layered models, our optimization strategy, and the use of more than two frames on both the Middlebury optical flow benchmark and the MIT layer segmentation benchmark.

pdf sup mat poster Project Page Project Page [BibTex]

pdf sup mat poster Project Page Project Page [BibTex]


Natural Metrics and Least-Committed Priors for Articulated Tracking
Natural Metrics and Least-Committed Priors for Articulated Tracking

Soren Hauberg, Stefan Sommer, Kim S. Pedersen

Image and Vision Computing, 30(6-7):453-461, Elsevier, 2012 (article)

Publishers site Code PDF [BibTex]

Publishers site Code PDF [BibTex]


Consumer Depth Cameras for Computer Vision - Research Topics and Applications
Consumer Depth Cameras for Computer Vision - Research Topics and Applications

Fossati, A., Gall, J., Grabner, H., Ren, X., Konolige, K.

Advances in Computer Vision and Pattern Recognition, Springer, 2012 (book)

workshop publisher's site [BibTex]

workshop publisher's site [BibTex]


Spatial Measures between Human Poses for Classification and Understanding
Spatial Measures between Human Poses for Classification and Understanding

Soren Hauberg, Kim S. Pedersen

In Articulated Motion and Deformable Objects, 7378, pages: 26-36, LNCS, (Editors: Perales, Francisco J. and Fisher, Robert B. and Moeslund, Thomas B.), Springer Berlin Heidelberg, 2012 (inproceedings)

Publishers site Project Page [BibTex]

Publishers site Project Page [BibTex]


A Geometric Take on Metric Learning
A Geometric Take on Metric Learning

Hauberg, S., Freifeld, O., Black, M. J.

In Advances in Neural Information Processing Systems (NIPS) 25, pages: 2033-2041, (Editors: P. Bartlett and F.C.N. Pereira and C.J.C. Burges and L. Bottou and K.Q. Weinberger), MIT Press, 2012 (inproceedings)

Abstract
Multi-metric learning techniques learn local metric tensors in different parts of a feature space. With such an approach, even simple classifiers can be competitive with the state-of-the-art because the distance measure locally adapts to the structure of the data. The learned distance measure is, however, non-metric, which has prevented multi-metric learning from generalizing to tasks such as dimensionality reduction and regression in a principled way. We prove that, with appropriate changes, multi-metric learning corresponds to learning the structure of a Riemannian manifold. We then show that this structure gives us a principled way to perform dimensionality reduction and regression according to the learned metrics. Algorithmically, we provide the first practical algorithm for computing geodesics according to the learned metrics, as well as algorithms for computing exponential and logarithmic maps on the Riemannian manifold. Together, these tools let many Euclidean algorithms take advantage of multi-metric learning. We illustrate the approach on regression and dimensionality reduction tasks that involve predicting measurements of the human body from shape data.

PDF Youtube Suppl. material Poster Project Page [BibTex]

PDF Youtube Suppl. material Poster Project Page [BibTex]

2008


Learning Optical Flow
Learning Optical Flow

Sun, D., Roth, S., Lewis, J., Black, M. J.

In European Conf. on Computer Vision, ECCV, 5304, pages: 83-97, LNCS, (Editors: Forsyth, D. and Torr, P. and Zisserman, A.), Springer-Verlag, October 2008 (inproceedings)

Abstract
Assumptions of brightness constancy and spatial smoothness underlie most optical flow estimation methods. In contrast to standard heuristic formulations, we learn a statistical model of both brightness constancy error and the spatial properties of optical flow using image sequences with associated ground truth flow fields. The result is a complete probabilistic model of optical flow. Specifically, the ground truth enables us to model how the assumption of brightness constancy is violated in naturalistic sequences, resulting in a probabilistic model of "brightness inconstancy". We also generalize previous high-order constancy assumptions, such as gradient constancy, by modeling the constancy of responses to various linear filters in a high-order random field framework. These filters are free variables that can be learned from training data. Additionally we study the spatial structure of the optical flow and how motion boundaries are related to image intensity boundaries. Spatial smoothness is modeled using a Steerable Random Field, where spatial derivatives of the optical flow are steered by the image brightness structure. These models provide a statistical motivation for previous methods and enable the learning of all parameters from training data. All proposed models are quantitatively compared on the Middlebury flow dataset.

pdf Springerlink version [BibTex]

2008

pdf Springerlink version [BibTex]


GNU Octave Manual Version 3
GNU Octave Manual Version 3

John W. Eaton, David Bateman, Soren Hauberg

Network Theory Ltd., October 2008 (book)

Publishers site GNU Octave [BibTex]

Publishers site GNU Octave [BibTex]


no image
Probabilistic Roadmap Method and Real Time Gait Changing Technique Implementation for Travel Time Optimization on a Designed Six-legged Robot

Ahmad, A., Dhang, N.

In pages: 1-5, October 2008 (inproceedings)

Abstract
This paper presents design and development of a six legged robot with a total of 12 degrees of freedom, two in each limb and then an implementation of 'obstacle and undulated terrain-based' probabilistic roadmap method for motion planning of this hexaped which is able to negotiate large undulations as obstacles. The novelty in this implementation is that, it doesnt require the complete view of the robot's configuration space at any given time during the traversal. It generates a map of the area that is in visibility range and finds the best suitable point in that field of view to make it as the next node of the algorithm. A particular category of undulations which are small enough are automatically 'run-over' as a part of the terrain and not considered as obstacles. The traversal between the nodes is optimized by taking the shortest path and the most optimum gait at that instance which the hexaped can assume. This is again a novel approach to have a real time gait changing technique to optimize the travel time. The hexaped limb can swing in the robot's X-Y plane and the lower link of the limb can move in robot's Z plane by an implementation of a four-bar mechanism. A GUI based server 'Yellow Ladybird' eventually which is the name of the hexaped, is made for real time monitoring and communicating to it the final destination co-ordinates.

link (url) [BibTex]


The naked truth: Estimating body shape under clothing,
The naked truth: Estimating body shape under clothing,

Balan, A., Black, M. J.

In European Conf. on Computer Vision, ECCV, 5304, pages: 15-29, LNCS, (Editors: D. Forsyth and P. Torr and A. Zisserman), Springer-Verlag, Marseilles, France, October 2008 (inproceedings)

Abstract
We propose a method to estimate the detailed 3D shape of a person from images of that person wearing clothing. The approach exploits a model of human body shapes that is learned from a database of over 2000 range scans. We show that the parameters of this shape model can be recovered independently of body pose. We further propose a generalization of the visual hull to account for the fact that observed silhouettes of clothed people do not provide a tight bound on the true 3D shape. With clothed subjects, different poses provide different constraints on the possible underlying 3D body shape. We consequently combine constraints across pose to more accurately estimate 3D body shape in the presence of occluding clothing. Finally we use the recovered 3D shape to estimate the gender of subjects and then employ gender-specific body models to refine our shape estimates. Results on a novel database of thousands of images of clothed and "naked" subjects, as well as sequences from the HumanEva dataset, suggest the method may be accurate enough for biometric shape analysis in video.

pdf pdf with higher quality images Springerlink version YouTube video on applications data slides [BibTex]

pdf pdf with higher quality images Springerlink version YouTube video on applications data slides [BibTex]


Infinite Kernel Learning
Infinite Kernel Learning

Gehler, P., Nowozin, S.

(178), Max Planck Institute, octomber 2008 (techreport)

project page pdf [BibTex]

project page pdf [BibTex]


A non-parametric {Bayesian} alternative to spike sorting
A non-parametric Bayesian alternative to spike sorting

Wood, F., Black, M. J.

J. Neuroscience Methods, 173(1):1–12, August 2008 (article)

Abstract
The analysis of extra-cellular neural recordings typically begins with careful spike sorting and all analysis of the data then rests on the correctness of the resulting spike trains. In many situations this is unproblematic as experimental and spike sorting procedures often focus on well isolated units. There is evidence in the literature, however, that errors in spike sorting can occur even with carefully collected and selected data. Additionally, chronically implanted electrodes and arrays with fixed electrodes cannot be easily adjusted to provide well isolated units. In these situations, multiple units may be recorded and the assignment of waveforms to units may be ambiguous. At the same time, analysis of such data may be both scientifically important and clinically relevant. In this paper we address this issue using a novel probabilistic model that accounts for several important sources of uncertainty and error in spike sorting. In lieu of sorting neural data to produce a single best spike train, we estimate a probabilistic model of spike trains given the observed data. We show how such a distribution over spike sortings can support standard neuroscientific questions while providing a representation of uncertainty in the analysis. As a representative illustration of the approach, we analyzed primary motor cortical tuning with respect to hand movement in data recorded with a chronic multi-electrode array in non-human primates.We found that the probabilistic analysis generally agrees with human sorters but suggests the presence of tuned units not detected by humans.

pdf preprint pdf from publisher PubMed [BibTex]

pdf preprint pdf from publisher PubMed [BibTex]


Dynamic time warping for binocular hand tracking and reconstruction
Dynamic time warping for binocular hand tracking and reconstruction

Romero, J., Kragic, D., Kyrki, V., Argyros, A.

In IEEE International Conference on Robotics and Automation,ICRA, pages: 2289 -2294, May 2008 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia
Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia

(J. Neural Engineering Highlights of 2008 Collection)

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Black, M. J.

J. Neural Engineering, 5, pages: 455–476, 2008 (article)

Abstract
Computer-mediated connections between human motor cortical neurons and assistive devices promise to improve or restore lost function in people with paralysis. Recently, a pilot clinical study of an intracortical neural interface system demonstrated that a tetraplegic human was able to obtain continuous two-dimensional control of a computer cursor using neural activity recorded from his motor cortex. This control, however, was not sufficiently accurate for reliable use in many common computer control tasks. Here, we studied several central design choices for such a system including the kinematic representation for cursor movement, the decoding method that translates neuronal ensemble spiking activity into a control signal and the cursor control task used during training for optimizing the parameters of the decoding method. In two tetraplegic participants, we found that controlling a cursor’s velocity resulted in more accurate closed-loop control than controlling its position directly and that cursor velocity control was achieved more rapidly than position control. Control quality was further improved over conventional linear filters by using a probabilistic method, the Kalman filter, to decode human motor cortical activity. Performance assessment based on standard metrics used for the evaluation of a wide range of pointing devices demonstrated significantly improved cursor control with velocity rather than position decoding.

pdf preprint pdf from publisher [BibTex]

pdf preprint pdf from publisher [BibTex]


Incremental nonparametric {Bayesian} regression
Incremental nonparametric Bayesian regression

Wood, F., Grollman, D. H., Heller, K. A., Jenkins, O. C., Black, M. J.

(CS-08-07), Brown University, Department of Computer Science, 2008 (techreport)

pdf [BibTex]

pdf [BibTex]


Brownian Warps for Non-Rigid Registration
Brownian Warps for Non-Rigid Registration

Mads Nielsen, Peter Johansen, Andrew Jackson, Benny Lautrup, Soren Hauberg

Journal of Mathematical Imaging and Vision, 31, pages: 221-231, Springer Netherlands, 2008 (article)

Publishers site PDF [BibTex]

Publishers site PDF [BibTex]


Simultaneous Visual Recognition of Manipulation Actions and Manipulated Objects
Simultaneous Visual Recognition of Manipulation Actions and Manipulated Objects

Kjellström, H., Romero, J., Martinez, D., Kragic, D.

In European Conference on Computer Vision, ECCV, pages: 336-349, 2008 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


no image
Tuning analysis of motor cortical neurons in a person with paralysis during performance of visually instructed cursor control tasks

Kim, S., Simeral, J. D., Hochberg, L. R., Truccolo, W., Donoghue, J., Friehs, G. M., Black, M. J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

[BibTex]

[BibTex]


Infinite Kernel Learning
Infinite Kernel Learning

Gehler, P., Nowozin, S.

In Proceedings of NIPS 2008 Workshop on "Kernel Learning: Automatic Selection of Optimal Kernels", 2008 (inproceedings)

project page pdf [BibTex]

project page pdf [BibTex]


 An Efficient Algorithm for Modelling Duration in Hidden Markov Models, with a Dramatic Application
An Efficient Algorithm for Modelling Duration in Hidden Markov Models, with a Dramatic Application

Soren Hauberg, Jakob Sloth

Journal of Mathematical Imaging and Vision, 31, pages: 165-170, Springer Netherlands, 2008 (article)

Publishers site Paper site PDF [BibTex]

Publishers site Paper site PDF [BibTex]


Visual Recognition of Grasps for Human-to-Robot Mapping
Visual Recognition of Grasps for Human-to-Robot Mapping

Kjellström, H., Romero, J., Kragic, D.

In IEEE/RSJ International Conference on Intelligent Robots and Systems, IROS, pages: 3192-3199, 2008 (inproceedings)

Pdf [BibTex]

Pdf [BibTex]


no image
More than two years of intracortically-based cursor control via a neural interface system

Hochberg, L. R., Simeral, J. D., Kim, S., Stein, J., Friehs, G. M., Black, M. J., Donoghue, J. P.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

[BibTex]

[BibTex]


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Decoding of reach and grasp from MI population spiking activity using a low-dimensional model of hand and arm posture

Yadollahpour, P., Shakhnarovich, G., Vargas-Irwin, C., Donoghue, J. P., Black, M. J.

2008 Abstract Viewer and Itinerary Planner, Society for Neuroscience, Washington, DC, 2008, Online (conference)

[BibTex]

[BibTex]


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Neural activity in the motor cortex of humans with tetraplegia

Donoghue, J., Simeral, J., Black, M., Kim, S., Truccolo, W., Hochberg, L.

AREADNE Research in Encoding And Decoding of Neural Ensembles, June, Santorini, Greece, 2008 (conference)

[BibTex]

[BibTex]