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21 results (View BibTeX file of all listed publications)

2009

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ISocRob-MSL 2009 Team Description Paper for Middle Sized League

Lima, P., Santos, J., Estilita, J., Barbosa, M., Ahmad, A., Carreira, J.

13th Annual RoboCup International Symposium 2009, July 2009 (techreport)

Abstract
This paper describes the status of the ISocRob MSL roboticsoccer team as required by the RoboCup 2009 qualification procedures.Since its previous participation in RoboCup, the ISocRob team has car-ried out significant developments in various topics, the most relevantof which are presented here. These include self-localization, 3D objecttracking and cooperative object localization, motion control and rela-tional behaviors. A brief description of the hardware of the ISocRobrobots and of the software architecture adopted by the team is also in-cluded.

[BibTex]

2009

Lima, P., Santos, J., Estilita, J., Barbosa, M., Ahmad, A., Carreira, J. ISocRob-MSL 2009 Team Description Paper for Middle Sized League 13th Annual RoboCup International Symposium 2009, July 2009 (techreport)

[BibTex]

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Fields of Experts

Roth, S., Black, M. J.

International Journal of Computer Vision (IJCV), 82(2):205-29, April 2009 (article)

Abstract
We develop a framework for learning generic, expressive image priors that capture the statistics of natural scenes and can be used for a variety of machine vision tasks. The approach provides a practical method for learning high-order Markov random field (MRF) models with potential functions that extend over large pixel neighborhoods. These clique potentials are modeled using the Product-of-Experts framework that uses non-linear functions of many linear filter responses. In contrast to previous MRF approaches all parameters, including the linear filters themselves, are learned from training data. We demonstrate the capabilities of this Field-of-Experts model with two example applications, image denoising and image inpainting, which are implemented using a simple, approximate inference scheme. While the model is trained on a generic image database and is not tuned toward a specific application, we obtain results that compete with specialized techniques.

pdf pdf from publisher [BibTex]

Roth, S., Black, M. J. Fields of Experts International Journal of Computer Vision (IJCV), 82(2):205-29, April 2009 (article)

pdf pdf from publisher [BibTex]

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Automatic recognition of rodent behavior: A tool for systematic phenotypic analysis

Serre, T.*, Jhuang, H*., Garrote, E., Poggio, T., Steele, A.

CBCL paper #283/MIT-CSAIL-TR #2009-052., MIT, 2009 (techreport)

pdf [BibTex]

Serre, T.*, Jhuang, H*., Garrote, E., Poggio, T., Steele, A. Automatic recognition of rodent behavior: A tool for systematic phenotypic analysis CBCL paper #283/MIT-CSAIL-TR #2009-052., MIT, 2009 (techreport)

pdf [BibTex]

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Left Ventricular Regional Wall Curvedness and Wall Stress in Patients with Ischemic Dilated Cardiomyopathy

Liang Zhong, Yi Su, Si Yong Yeo, Ru San Tan Dhanjoo Ghista, Ghassan Kassab

American Journal of Physiology – Heart and Circulatory Physiology, 296(3):H573-84, 2009 (article)

Abstract
Geometric remodeling of the left ventricle (LV) after myocardial infarction is associated with changes in myocardial wall stress. The objective of this study was to determine the regional curvatures and wall stress based on three-dimensional (3-D) reconstructions of the LV using MRI. Ten patients with ischemic dilated cardiomyopathy (IDCM) and 10 normal subjects underwent MRI scan. The IDCM patients also underwent delayed gadolinium-enhancement imaging to delineate the extent of myocardial infarct. Regional curvedness, local radii of curvature, and wall thickness were calculated. The percent curvedness change between end diastole and end systole was also calculated. In normal heart, a short- and long-axis two-dimensional analysis showed a 41 +/- 11% and 45 +/- 12% increase of the mean of peak systolic wall stress between basal and apical sections, respectively. However, 3-D analysis showed no significant difference in peak systolic wall stress from basal and apical sections (P = 0.298, ANOVA). LV shape differed between IDCM patients and normal subjects in several ways: LV shape was more spherical (sphericity index = 0.62 +/- 0.08 vs. 0.52 +/- 0.06, P < 0.05), curvedness at end diastole (mean for 16 segments = 0.034 +/- 0.0056 vs. 0.040 +/- 0.0071 mm(-1), P < 0.001) and end systole (mean for 16 segments = 0.037 +/- 0.0068 vs. 0.067 +/- 0.020 mm(-1), P < 0.001) was affected by infarction, and peak systolic wall stress was significantly increased at each segment in IDCM patients. The 3-D quantification of regional wall stress by cardiac MRI provides more precise evaluation of cardiac mechanics. Identification of regional curvedness and wall stresses helps delineate the mechanisms of LV remodeling in IDCM and may help guide therapeutic LV restoration.

[BibTex]

Liang Zhong, Yi Su, Si Yong Yeo, Ru San Tan Dhanjoo Ghista, Ghassan Kassab Left Ventricular Regional Wall Curvedness and Wall Stress in Patients with Ischemic Dilated Cardiomyopathy American Journal of Physiology – Heart and Circulatory Physiology, 296(3):H573-84, 2009 (article)

[BibTex]

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A Curvature-Based Approach for Left Ventricular Shape Analysis from Cardiac Magnetic Resonance Imaging

Si Yong Yeo, Liang Zhong, Yi Su, Ru San Tan, Dhanjoo Ghista

Medical & Biological Engineering & Computing, 47(3):313-322, 2009 (article)

Abstract
It is believed that left ventricular (LV) regional shape is indicative of LV regional function, and cardiac pathologies are often associated with regional alterations in ventricular shape. In this article, we present a set of procedures for evaluating regional LV surface shape from anatomically accurate models reconstructed from cardiac magnetic resonance (MR) images. LV surface curvatures are computed using local surface fitting method, which enables us to assess regional LV shape and its variation. Comparisons are made between normal and diseased hearts. It is illustrated that LV surface curvatures at different regions of the normal heart are higher than those of the diseased heart. Also, the normal heart experiences a larger change in regional curvedness during contraction than the diseased heart. It is believed that with a wide range of dataset being evaluated, this approach will provide a new and efficient way of quantifying LV regional function.

link (url) [BibTex]

Si Yong Yeo, Liang Zhong, Yi Su, Ru San Tan, Dhanjoo Ghista A Curvature-Based Approach for Left Ventricular Shape Analysis from Cardiac Magnetic Resonance Imaging Medical & Biological Engineering & Computing, 47(3):313-322, 2009 (article)

link (url) [BibTex]

2008

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GNU Octave Manual Version 3

John W. Eaton, David Bateman, Soren Hauberg

Network Theory Ltd., October 2008 (book)

Publishers site GNU Octave [BibTex]

2008

John W. Eaton, David Bateman, Soren Hauberg GNU Octave Manual Version 3 Network Theory Ltd., October 2008 (book)

Publishers site GNU Octave [BibTex]

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Infinite Kernel Learning

Gehler, P., Nowozin, S.

(178), Max Planck Institute, octomber 2008 (techreport)

project page pdf [BibTex]

Gehler, P., Nowozin, S. Infinite Kernel Learning (178), Max Planck Institute, octomber 2008 (techreport)

project page pdf [BibTex]

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A non-parametric Bayesian alternative to spike sorting

Wood, F., Black, M. J.

J. Neuroscience Methods, 173(1):1–12, August 2008 (article)

Abstract
The analysis of extra-cellular neural recordings typically begins with careful spike sorting and all analysis of the data then rests on the correctness of the resulting spike trains. In many situations this is unproblematic as experimental and spike sorting procedures often focus on well isolated units. There is evidence in the literature, however, that errors in spike sorting can occur even with carefully collected and selected data. Additionally, chronically implanted electrodes and arrays with fixed electrodes cannot be easily adjusted to provide well isolated units. In these situations, multiple units may be recorded and the assignment of waveforms to units may be ambiguous. At the same time, analysis of such data may be both scientifically important and clinically relevant. In this paper we address this issue using a novel probabilistic model that accounts for several important sources of uncertainty and error in spike sorting. In lieu of sorting neural data to produce a single best spike train, we estimate a probabilistic model of spike trains given the observed data. We show how such a distribution over spike sortings can support standard neuroscientific questions while providing a representation of uncertainty in the analysis. As a representative illustration of the approach, we analyzed primary motor cortical tuning with respect to hand movement in data recorded with a chronic multi-electrode array in non-human primates.We found that the probabilistic analysis generally agrees with human sorters but suggests the presence of tuned units not detected by humans.

pdf preprint pdf from publisher PubMed [BibTex]

Wood, F., Black, M. J. A non-parametric Bayesian alternative to spike sorting J. Neuroscience Methods, 173(1):1–12, August 2008 (article)

pdf preprint pdf from publisher PubMed [BibTex]

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Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia

(J. Neural Engineering Highlights of 2008 Collection)

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Black, M. J.

J. Neural Engineering, 5, pages: 455–476, 2008 (article)

Abstract
Computer-mediated connections between human motor cortical neurons and assistive devices promise to improve or restore lost function in people with paralysis. Recently, a pilot clinical study of an intracortical neural interface system demonstrated that a tetraplegic human was able to obtain continuous two-dimensional control of a computer cursor using neural activity recorded from his motor cortex. This control, however, was not sufficiently accurate for reliable use in many common computer control tasks. Here, we studied several central design choices for such a system including the kinematic representation for cursor movement, the decoding method that translates neuronal ensemble spiking activity into a control signal and the cursor control task used during training for optimizing the parameters of the decoding method. In two tetraplegic participants, we found that controlling a cursor’s velocity resulted in more accurate closed-loop control than controlling its position directly and that cursor velocity control was achieved more rapidly than position control. Control quality was further improved over conventional linear filters by using a probabilistic method, the Kalman filter, to decode human motor cortical activity. Performance assessment based on standard metrics used for the evaluation of a wide range of pointing devices demonstrated significantly improved cursor control with velocity rather than position decoding.

pdf preprint pdf from publisher [BibTex]

Kim, S., Simeral, J., Hochberg, L., Donoghue, J. P., Black, M. J. Neural control of computer cursor velocity by decoding motor cortical spiking activity in humans with tetraplegia J. Neural Engineering, 5, pages: 455–476, 2008 (article)

pdf preprint pdf from publisher [BibTex]

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Incremental nonparametric Bayesian regression

Wood, F., Grollman, D. H., Heller, K. A., Jenkins, O. C., Black, M. J.

(CS-08-07), Brown University, Department of Computer Science, 2008 (techreport)

pdf [BibTex]

Wood, F., Grollman, D. H., Heller, K. A., Jenkins, O. C., Black, M. J. Incremental nonparametric Bayesian regression (CS-08-07), Brown University, Department of Computer Science, 2008 (techreport)

pdf [BibTex]

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Brownian Warps for Non-Rigid Registration

Mads Nielsen, Peter Johansen, Andrew Jackson, Benny Lautrup, Soren Hauberg

Journal of Mathematical Imaging and Vision, 31, pages: 221-231, Springer Netherlands, 2008 (article)

Publishers site PDF [BibTex]

Mads Nielsen, Peter Johansen, Andrew Jackson, Benny Lautrup, Soren Hauberg Brownian Warps for Non-Rigid Registration Journal of Mathematical Imaging and Vision, 31, pages: 221-231, Springer Netherlands, 2008 (article)

Publishers site PDF [BibTex]

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An Efficient Algorithm for Modelling Duration in Hidden Markov Models, with a Dramatic Application

Soren Hauberg, Jakob Sloth

Journal of Mathematical Imaging and Vision, 31, pages: 165-170, Springer Netherlands, 2008 (article)

Publishers site Paper site PDF [BibTex]

Soren Hauberg, Jakob Sloth An Efficient Algorithm for Modelling Duration in Hidden Markov Models, with a Dramatic Application Journal of Mathematical Imaging and Vision, 31, pages: 165-170, Springer Netherlands, 2008 (article)

Publishers site Paper site PDF [BibTex]

2006

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Implicit Wiener Series, Part II: Regularised estimation

Gehler, P., Franz, M.

(148), Max Planck Institute, 2006 (techreport)

pdf [BibTex]

2006

Gehler, P., Franz, M. Implicit Wiener Series, Part II: Regularised estimation (148), Max Planck Institute, 2006 (techreport)

pdf [BibTex]

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HumanEva: Synchronized video and motion capture dataset for evaluation of articulated human motion

Sigal, L., Black, M. J.

(CS-06-08), Brown University, Department of Computer Science, 2006 (techreport)

pdf abstract [BibTex]

Sigal, L., Black, M. J. HumanEva: Synchronized video and motion capture dataset for evaluation of articulated human motion (CS-06-08), Brown University, Department of Computer Science, 2006 (techreport)

pdf abstract [BibTex]

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Bayesian population decoding of motor cortical activity using a Kalman filter

Wu, W., Gao, Y., Bienenstock, E., Donoghue, J. P., Black, M. J.

Neural Computation, 18(1):80-118, 2006 (article)

Abstract
Effective neural motor prostheses require a method for decoding neural activity representing desired movement. In particular, the accurate reconstruction of a continuous motion signal is necessary for the control of devices such as computer cursors, robots, or a patient's own paralyzed limbs. For such applications, we developed a real-time system that uses Bayesian inference techniques to estimate hand motion from the firing rates of multiple neurons. In this study, we used recordings that were previously made in the arm area of primary motor cortex in awake behaving monkeys using a chronically implanted multielectrode microarray. Bayesian inference involves computing the posterior probability of the hand motion conditioned on a sequence of observed firing rates; this is formulated in terms of the product of a likelihood and a prior. The likelihood term models the probability of firing rates given a particular hand motion. We found that a linear gaussian model could be used to approximate this likelihood and could be readily learned from a small amount of training data. The prior term defines a probabilistic model of hand kinematics and was also taken to be a linear gaussian model. Decoding was performed using a Kalman filter, which gives an efficient recursive method for Bayesian inference when the likelihood and prior are linear and gaussian. In off-line experiments, the Kalman filter reconstructions of hand trajectory were more accurate than previously reported results. The resulting decoding algorithm provides a principled probabilistic model of motor-cortical coding, decodes hand motion in real time, provides an estimate of uncertainty, and is straightforward to implement. Additionally the formulation unifies and extends previous models of neural coding while providing insights into the motor-cortical code.

pdf preprint pdf from publisher abstract [BibTex]

Wu, W., Gao, Y., Bienenstock, E., Donoghue, J. P., Black, M. J. Bayesian population decoding of motor cortical activity using a Kalman filter Neural Computation, 18(1):80-118, 2006 (article)

pdf preprint pdf from publisher abstract [BibTex]

1996

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Estimating optical flow in segmented images using variable-order parametric models with local deformations

Black, M. J., Jepson, A.

IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(10):972-986, October 1996 (article)

Abstract
This paper presents a new model for estimating optical flow based on the motion of planar regions plus local deformations. The approach exploits brightness information to organize and constrain the interpretation of the motion by using segmented regions of piecewise smooth brightness to hypothesize planar regions in the scene. Parametric flow models are estimated in these regions in a two step process which first computes a coarse fit and estimates the appropriate parameterization of the motion of the region (two, six, or eight parameters). The initial fit is refined using a generalization of the standard area-based regression approaches. Since the assumption of planarity is likely to be violated, we allow local deformations from the planar assumption in the same spirit as physically-based approaches which model shape using coarse parametric models plus local deformations. This parametric+deformation model exploits the strong constraints of parametric approaches while retaining the adaptive nature of regularization approaches. Experimental results on a variety of images indicate that the parametric+deformation model produces accurate flow estimates while the incorporation of brightness segmentation provides precise localization of motion boundaries.

pdf pdf from publisher [BibTex]

1996

Black, M. J., Jepson, A. Estimating optical flow in segmented images using variable-order parametric models with local deformations IEEE Transactions on Pattern Analysis and Machine Intelligence, 18(10):972-986, October 1996 (article)

pdf pdf from publisher [BibTex]

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On the unification of line processes, outlier rejection, and robust statistics with applications in early vision

Black, M., Rangarajan, A.

International Journal of Computer Vision , 19(1):57-92, July 1996 (article)

Abstract
The modeling of spatial discontinuities for problems such as surface recovery, segmentation, image reconstruction, and optical flow has been intensely studied in computer vision. While “line-process” models of discontinuities have received a great deal of attention, there has been recent interest in the use of robust statistical techniques to account for discontinuities. This paper unifies the two approaches. To achieve this we generalize the notion of a “line process” to that of an analog “outlier process” and show how a problem formulated in terms of outlier processes can be viewed in terms of robust statistics. We also characterize a class of robust statistical problems for which an equivalent outlier-process formulation exists and give a straightforward method for converting a robust estimation problem into an outlier-process formulation. We show how prior assumptions about the spatial structure of outliers can be expressed as constraints on the recovered analog outlier processes and how traditional continuation methods can be extended to the explicit outlier-process formulation. These results indicate that the outlier-process approach provides a general framework which subsumes the traditional line-process approaches as well as a wide class of robust estimation problems. Examples in surface reconstruction, image segmentation, and optical flow are presented to illustrate the use of outlier processes and to show how the relationship between outlier processes and robust statistics can be exploited. An appendix provides a catalog of common robust error norms and their equivalent outlier-process formulations.

pdf pdf from publisher DOI [BibTex]

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Mixture Models for Image Representation

Jepson, A., Black, M.

PRECARN ARK Project Technical Report ARK96-PUB-54, March 1996 (techreport)

Abstract
We consider the estimation of local greylevel image structure in terms of a layered representation. This type of representation has recently been successfully used to segment various objects from clutter using either optical ow or stereo disparity information. We argue that the same type of representation is useful for greylevel data in that it allows for the estimation of properties for each of several different components without prior segmentation. Our emphasis in this paper is on the process used to extract such a layered representation from a given image In particular we consider a variant of the EM algorithm for the estimation of the layered model and consider a novel technique for choosing the number of layers to use. We briefly consider the use of a simple version of this approach for image segmentation and suggest two potential applications to the ARK project

pdf [BibTex]

Jepson, A., Black, M. Mixture Models for Image Representation PRECARN ARK Project Technical Report ARK96-PUB-54, March 1996 (techreport)

pdf [BibTex]

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The robust estimation of multiple motions: Parametric and piecewise-smooth flow fields

Black, M. J., Anandan, P.

Computer Vision and Image Understanding, 63(1):75-104, January 1996 (article)

Abstract
Most approaches for estimating optical flow assume that, within a finite image region, only a single motion is present. This single motion assumption is violated in common situations involving transparency, depth discontinuities, independently moving objects, shadows, and specular reflections. To robustly estimate optical flow, the single motion assumption must be relaxed. This paper presents a framework based on robust estimation that addresses violations of the brightness constancy and spatial smoothness assumptions caused by multiple motions. We show how the robust estimation framework can be applied to standard formulations of the optical flow problem thus reducing their sensitivity to violations of their underlying assumptions. The approach has been applied to three standard techniques for recovering optical flow: area-based regression, correlation, and regularization with motion discontinuities. This paper focuses on the recovery of multiple parametric motion models within a region, as well as the recovery of piecewise-smooth flow fields, and provides examples with natural and synthetic image sequences.

pdf pdf from publisher [BibTex]

Black, M. J., Anandan, P. The robust estimation of multiple motions: Parametric and piecewise-smooth flow fields Computer Vision and Image Understanding, 63(1):75-104, January 1996 (article)

pdf pdf from publisher [BibTex]

1994

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A computational and evolutionary perspective on the role of representation in computer vision

Tarr, M. J., Black, M. J.

CVGIP: Image Understanding, 60(1):65-73, July 1994 (article)

Abstract
Recently, the assumed goal of computer vision, reconstructing a representation of the scene, has been critcized as unproductive and impractical. Critics have suggested that the reconstructive approach should be supplanted by a new purposive approach that emphasizes functionality and task driven perception at the cost of general vision. In response to these arguments, we claim that the recovery paradigm central to the reconstructive approach is viable, and, moreover, provides a promising framework for understanding and modeling general purpose vision in humans and machines. An examination of the goals of vision from an evolutionary perspective and a case study involving the recovery of optic flow support this hypothesis. In particular, while we acknowledge that there are instances where the purposive approach may be appropriate, these are insufficient for implementing the wide range of visual tasks exhibited by humans (the kind of flexible vision system presumed to be an end-goal of artificial intelligence). Furthermore, there are instances, such as recent work on the estimation of optic flow, where the recovery paradigm may yield useful and robust results. Thus, contrary to certain claims, the purposive approach does not obviate the need for recovery and reconstruction of flexible representations of the world.

pdf [BibTex]

1994

Tarr, M. J., Black, M. J. A computational and evolutionary perspective on the role of representation in computer vision CVGIP: Image Understanding, 60(1):65-73, July 1994 (article)

pdf [BibTex]

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Reconstruction and purpose

Tarr, M. J., Black, M. J.

CVGIP: Image Understanding, 60(1):113-118, July 1994 (article)

pdf [BibTex]

Tarr, M. J., Black, M. J. Reconstruction and purpose CVGIP: Image Understanding, 60(1):113-118, July 1994 (article)

pdf [BibTex]